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  5. AT5G27270

AT5G27270 (EMB976)


Aliases : EMB976

Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G27270
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Ceric.11G008200.1 EMB976, Ceric.11G008200 plastidial splicing factor *(PDM4) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.05 OrthoFinder output from all 47 species
Gb_15749 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
LOC_Os06g02120.1 EMB976, LOC_Os06g02120 Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
MA_10434955g0010 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
Solyc03g097000.3.1 EMB976, Solyc03g097000 Pentatricopeptide repeat-containing protein At5g27270... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP HCCA
MF GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0051731 polynucleotide 5'-hydroxyl-kinase activity IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 258 305
IPR002885 Pentatricopeptide_repeat 326 370
IPR002885 Pentatricopeptide_repeat 845 890
IPR002885 Pentatricopeptide_repeat 186 234
IPR002885 Pentatricopeptide_repeat 404 427
IPR002885 Pentatricopeptide_repeat 951 980
IPR002885 Pentatricopeptide_repeat 435 463
IPR002885 Pentatricopeptide_repeat 709 735
IPR002885 Pentatricopeptide_repeat 915 945
IPR002885 Pentatricopeptide_repeat 540 565
IPR002885 Pentatricopeptide_repeat 761 820
No external refs found!