AT5G22450

Description : unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

Gene families : OG0002109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G22450
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
Adi_g052120	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g05137	No alias	component *(ADA3) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Als_g29245	No alias	component *(ADA3) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Als_g49585	No alias	component *(ADA3) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Aspi01Gene24817.t2	Aspi01Gene24817	component *(ADA3) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Aspi01Gene32698.t2	Aspi01Gene32698	component *(ADA3) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Aspi01Gene57019.t1	Aspi01Gene57019	component *(ADA3) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Ceric.34G015100.1	Ceric.34G015100	component *(ADA3) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ehy_g12120	No alias	component *(ADA3) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
GSVIVT01015158001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
LOC_Os01g73620.1	LOC_Os01g73620	component ADA3 of SAGA transcription co-activator complex	0.04	OrthoFinder output from all 47 species
LOC_Os05g01690.1	LOC_Os05g01690	component ADA3 of SAGA transcription co-activator complex	0.04	OrthoFinder output from all 47 species
Lfl_g10282	No alias	component *(ADA3) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Mp1g06630.1	No alias	component ADA3 of SAGA transcription co-activator complex	0.02	OrthoFinder output from all 47 species
Pir_g13632	No alias	component *(ADA3) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ppi_g05349	No alias	component *(ADA3) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Sam_g48948	No alias	component *(ADA3) of SAGA transcription co-activator...	0.02	OrthoFinder output from all 47 species
Smo407119	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Zm00001e018678_P002	Zm00001e018678	component ADA3 of SAGA transcription co-activator complex	0.03	OrthoFinder output from all 47 species
Zm00001e027665_P001	Zm00001e027665	component ADA3 of SAGA transcription co-activator complex	0.04	OrthoFinder output from all 47 species
Zm00001e029688_P001	Zm00001e029688	component ADA3 of SAGA transcription co-activator complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
MF	GO:0043295	glutathione binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0072341	modified amino acid binding	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:1900750	oligopeptide binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G22450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation