AT5G20290

Description : Ribosomal protein S8e family protein

Gene families : OG0000906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000906_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20290

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00055p00155570	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder output from all 47 species
AMTR_s00109p00031400	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.35	OrthoFinder output from all 47 species
Adi_g061825	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g113421	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Adi_g114367	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Adi_g126294	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aev_g10713	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aev_g10714	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g00910	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ala_g04001	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g34365	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Ala_g38098	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Als_g02310	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Als_g28264	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g42521	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g62935	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aob_g07667	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Aop_g11567	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Aop_g32909	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Aop_g50196	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aspi01Gene08566.t1	Aspi01Gene08566	component *(eS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0173.g055841	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g19773	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g36871	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g66206	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g69923	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ceric.01G124400.1	Ceric.01G124400	component *(eS8) of small ribosomal-subunit (SSU)...	0.34	OrthoFinder output from all 47 species
Ceric.12G096700.1	Ceric.12G096700	component *(eS8) of small ribosomal-subunit (SSU)...	0.3	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020610.79	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.31	OrthoFinder output from all 47 species
Cre06.g272800	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.33	OrthoFinder output from all 47 species
Dac_g03069	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.22	OrthoFinder output from all 47 species
Dac_g14336	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Dcu_g03556	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g29644	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Dde_g46750	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g00729	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01006249001	No alias	40S ribosomal protein S8 OS=Zea mays	0.1	OrthoFinder output from all 47 species
GSVIVT01031566001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	OrthoFinder output from all 47 species
GSVIVT01037763001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.41	OrthoFinder output from all 47 species
Gb_28325	No alias	component RPS8 of SSU proteome	0.28	OrthoFinder output from all 47 species
LOC_Os02g28810.1	LOC_Os02g28810	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica...	0.39	OrthoFinder output from all 47 species
LOC_Os04g28180.1	LOC_Os04g28180	component RPS8 of SSU proteome	0.26	OrthoFinder output from all 47 species
Len_g21245	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g05239	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g22796	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_10436736g0010	No alias	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
MA_14571g0010	No alias	component RPS8 of SSU proteome	0.13	OrthoFinder output from all 47 species
MA_4907g0010	No alias	40S ribosomal protein S8 OS=Prunus armeniaca...	0.04	OrthoFinder output from all 47 species
MA_9738483g0010	No alias	component RPS8 of SSU proteome	0.06	OrthoFinder output from all 47 species
Mp2g16300.1	No alias	component RPS8 of SSU proteome	0.48	OrthoFinder output from all 47 species
Msp_g01868	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Msp_g18199	No alias	not classified & original description: none	0.18	OrthoFinder output from all 47 species
Nbi_g01823	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Ore_g02405	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g02421	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Pir_g03002	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Pir_g03638	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g54513	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g55370	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pp3c12_18260V3.1	Pp3c12_18260	Ribosomal protein S8e family protein	0.05	OrthoFinder output from all 47 species
Pp3c13_20020V3.1	Pp3c13_20020	Ribosomal protein S8e family protein	0.35	OrthoFinder output from all 47 species
Pp3c19_6490V3.1	Pp3c19_6490	Ribosomal protein S8e family protein	0.22	OrthoFinder output from all 47 species
Pp3c4_11370V3.1	Pp3c4_11370	Ribosomal protein S8e family protein	0.15	OrthoFinder output from all 47 species
Ppi_g14976	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g16148	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g25083	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g27614	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008597	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023905	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Sam_g06814	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Sam_g15855	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Sam_g19629	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g27314	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Solyc06g007570.3.1	Solyc06g007570	component RPS8 of SSU proteome	0.38	OrthoFinder output from all 47 species
Solyc06g083180.4.1	Solyc06g083180	component RPS8 of SSU proteome	0.42	OrthoFinder output from all 47 species
Solyc07g065170.3.1	Solyc07g065170	component RPS8 of SSU proteome	0.11	OrthoFinder output from all 47 species
Solyc09g057650.3.1	Solyc09g057650	component RPS8 of SSU proteome	0.21	OrthoFinder output from all 47 species
Solyc10g006070.3.1	Solyc10g006070	component RPS8 of SSU proteome	0.19	OrthoFinder output from all 47 species
Spa_g11102	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Spa_g21054	No alias	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Spa_g25236	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Spa_g35475	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g44564	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Spa_g53727	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.3	OrthoFinder output from all 47 species
Spa_g53728	No alias	not classified & original description: none	0.14	OrthoFinder output from all 47 species
Tin_g03723	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Tin_g09569	No alias	component *(eS8) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Tin_g37888	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004092_P002	Zm00001e004092	component RPS8 of SSU proteome	0.18	OrthoFinder output from all 47 species
Zm00001e024994_P001	Zm00001e024994	component RPS8 of SSU proteome	0.07	OrthoFinder output from all 47 species
Zm00001e024995_P001	Zm00001e024995	component RPS8 of SSU proteome	0.37	OrthoFinder output from all 47 species
Zm00001e024996_P001	Zm00001e024996	component RPS8 of SSU proteome	0.14	OrthoFinder output from all 47 species
Zm00001e024999_P001	Zm00001e024999	component RPS8 of SSU proteome	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IBA	Interproscan
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0003735	structural constituent of ribosome	IBA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006414	translational elongation	IBA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022309	Ribosomal_S8e/biogenesis_NSA2	1	201

External Links

No external refs found!

AT5G20290

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation