AT5G20160

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00043p00189790	evm_27.TU.AmTr_v1...	RNA processing.RNA modification.rRNA/tRNA...	0.16	OrthoFinder output from all 47 species
Ala_g06081	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Als_g09839	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.03	OrthoFinder output from all 47 species
Als_g25287	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Als_g39727	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Als_g45351	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Aob_g01042	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene37242.t1	Aspi01Gene37242	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene59957.t1	Aspi01Gene59957	component *(Snu13) of snoRNP rRNA methylation complex &...	0.05	OrthoFinder output from all 47 species
Azfi_s0280.g062289	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.07	OrthoFinder output from all 47 species
Cba_g29914	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Ceric.02G026900.1	Ceric.02G026900	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Ceric.03G070800.1	Ceric.03G070800	component *(Snu13) of snoRNP rRNA methylation complex &...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000600.11	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.03	OrthoFinder output from all 47 species
Cre06.g249250	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.24	OrthoFinder output from all 47 species
Dac_g02506	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.03	OrthoFinder output from all 47 species
Dac_g29609	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.06	OrthoFinder output from all 47 species
Dcu_g19050	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01015520001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.11	OrthoFinder output from all 47 species
Gb_01849	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.17	OrthoFinder output from all 47 species
Gb_14400	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.04	OrthoFinder output from all 47 species
LOC_Os03g13800.1	LOC_Os03g13800	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.24	OrthoFinder output from all 47 species
LOC_Os10g03540.1	LOC_Os10g03540	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.08	OrthoFinder output from all 47 species
Lfl_g21991	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.07	OrthoFinder output from all 47 species
MA_10201g0010	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.06	OrthoFinder output from all 47 species
MA_16906g0010	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.18	OrthoFinder output from all 47 species
MA_433779g0010	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.22	OrthoFinder output from all 47 species
Mp7g12360.1	No alias	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.02	OrthoFinder output from all 47 species
Nbi_g28965	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Ore_g24962	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.01	OrthoFinder output from all 47 species
Pir_g09212	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.03	OrthoFinder output from all 47 species
Pnu_g32095	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.02	OrthoFinder output from all 47 species
Pp3c14_21860V3.1	Pp3c14_21860	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.05	OrthoFinder output from all 47 species
Pp3c17_18010V3.1	Pp3c17_18010	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.07	OrthoFinder output from all 47 species
Sam_g08742	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.24	OrthoFinder output from all 47 species
Sam_g08743	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.11	OrthoFinder output from all 47 species
Smo159569	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.02	OrthoFinder output from all 47 species
Solyc09g011420.3.1	Solyc09g011420	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.03	OrthoFinder output from all 47 species
Spa_g42722	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Spa_g56417	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Tin_g17080	No alias	component *(Snu13) of snoRNP rRNA methylation complex &...	0.04	OrthoFinder output from all 47 species
Zm00001e001004_P001	Zm00001e001004	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.12	OrthoFinder output from all 47 species
Zm00001e038611_P002	Zm00001e038611	protein factor NHP2L1/SNU13 of U4/U6 small nuclear...	0.21	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	RCA	Interproscan
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	23	111

External Links

No external refs found!

AT5G20160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation