AT5G20010 (RAN1, RAN-1, ATRAN1)

Aliases : RAN1, RAN-1, ATRAN1

Description : RAS-related nuclear protein-1

Gene families : OG0000916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000916_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G20010

Target	Alias	Description	ECC score	Gene Family Method
Adi_g001520	RAN2	GTPase *(Ran) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g026180	RAN2	GTPase *(Ran) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01035804001	RAN2	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
GSVIVT01035805001	RAN2	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
LOC_Os05g49890.1	RAN3, ATRAN3,...	Ran GTPase	0.04	OrthoFinder output from all 47 species
Lfl_g22288	RAN3, ATRAN3	GTPase *(Ran) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g23100	RAN2	GTPase *(Ran) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11147	RAN2	GTPase *(Ran) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e032496_P003	RAN3, ATRAN3,...	Ran GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006606	protein import into nucleus	TAS	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005432	calcium:sodium antiporter activity	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
MF	GO:0009001	serine O-acetyltransferase activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0009970	cellular response to sulfate starvation	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010080	regulation of floral meristem growth	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015368	calcium:monoatomic cation antiporter activity	IEP	HCCA
MF	GO:0015491	obsolete cation:cation antiporter activity	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016412	serine O-acyltransferase activity	IEP	HCCA
MF	GO:0016413	O-acetyltransferase activity	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
BP	GO:0018126	protein hydroxylation	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	HCCA
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035265	organ growth	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
BP	GO:0042762	regulation of sulfur metabolic process	IEP	HCCA
BP	GO:0051176	positive regulation of sulfur metabolic process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0060771	phyllotactic patterning	IEP	HCCA
BP	GO:0060772	leaf phyllotactic patterning	IEP	HCCA
BP	GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	15	171

External Links

No external refs found!

AT5G20010 (RAN1, RAN-1, ATRAN1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation