AT5G19420

Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G19420

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00031410	evm_27.TU.AmTr_v1...	PH, RCC1 and FYVE domains-containing protein 1...	0.03	OrthoFinder output from all 47 species
Adi_g014208	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g059789	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g117138	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g14846	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g20707	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g09949	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene71481.t1	Aspi01Gene71481	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0027.g023605	No alias	not classified & original description: CDS=735-3878	0.03	OrthoFinder output from all 47 species
Ceric.25G075400.1	Ceric.25G075400	not classified & original description: pacid=50594355...	0.03	OrthoFinder output from all 47 species
Cre16.g691050	PRAF1	PH, RCC1 and FYVE domains-containing protein 1...	0.02	OrthoFinder output from all 47 species
Dac_g11534	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g30318	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01001675001	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.04	OrthoFinder output from all 47 species
GSVIVT01037259001	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.02	OrthoFinder output from all 47 species
Gb_13554	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.05	OrthoFinder output from all 47 species
LOC_Os05g01610.1	PRAF1, LOC_Os05g01610	PH, RCC1 and FYVE domains-containing protein 1...	0.03	OrthoFinder output from all 47 species
MA_54149g0010	PRAF1	PH, RCC1 and FYVE domains-containing protein 1...	0.04	OrthoFinder output from all 47 species
Mp1g24610.1	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.02	OrthoFinder output from all 47 species
Nbi_g03847	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g06824	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g27077	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14558	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo112120	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.04	OrthoFinder output from all 47 species
Solyc11g065120.3.1	Solyc11g065120	PH, RCC1 and FYVE domains-containing protein 1...	0.04	OrthoFinder output from all 47 species
Zm00001e028312_P001	Zm00001e028312	PH, RCC1 and FYVE domains-containing protein 1...	0.03	OrthoFinder output from all 47 species
Zm00001e029685_P002	PRAF1, Zm00001e029685	PH, RCC1 and FYVE domains-containing protein 1...	0.04	OrthoFinder output from all 47 species
Zm00001e032303_P001	Zm00001e032303	PH, RCC1 and FYVE domains-containing protein 1...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002833	positive regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005876	spindle microtubule	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008158	hedgehog receptor activity	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010112	regulation of systemic acquired resistance	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031349	positive regulation of defense response	IEP	HCCA
BP	GO:0032103	positive regulation of response to external stimulus	IEP	HCCA
BP	GO:0032922	circadian regulation of gene expression	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
MF	GO:0051011	microtubule minus-end binding	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:1901672	positive regulation of systemic acquired resistance	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000022	regulation of jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000408	Reg_chr_condens	551	600
IPR000408	Reg_chr_condens	331	379
IPR000408	Reg_chr_condens	499	548
IPR000408	Reg_chr_condens	436	484
IPR000408	Reg_chr_condens	605	652
IPR000408	Reg_chr_condens	382	432
IPR027988	BRX_N	915	950
IPR000306	Znf_FYVE	656	722
IPR001849	PH_domain	23	129
IPR013591	Brevis_radix_dom	1030	1085

External Links

No external refs found!

AT5G19420

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation