AT5G17920 (ATCIMS, ATMS1, ATMETS)


Aliases : ATCIMS, ATMS1, ATMETS

Description : Cobalamin-independent synthase family protein


Gene families : OG0000901 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000901_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G17920

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00117110 ATCIMS, ATMS1,... Amino acid metabolism.biosynthesis.aspartate... 0.08 OrthoFinder output from all 47 species
Ala_g08137 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Als_g25137 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07584 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Aop_g31283 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g06896 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09671 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14828 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Cba_g28395 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G086700.1 ATCIMS, ATMS1,... EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Ceric.14G083200.1 ATCIMS, ATMS1,... EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Cre03.g180750 ATCIMS, ATMS1, ATMETS Amino acid metabolism.biosynthesis.aspartate... 0.1 OrthoFinder output from all 47 species
Dac_g06622 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Dac_g21137 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Dac_g39791 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Dcu_g14356 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Dcu_g20010 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g08038 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029971001 ATCIMS, ATMS1, ATMETS Amino acid metabolism.biosynthesis.aspartate... 0.1 OrthoFinder output from all 47 species
Gb_23743 MS2, ATMS2 methyl-tetrahydrofolate-dependent methionine synthase 0.04 OrthoFinder output from all 47 species
LOC_Os12g42876.1 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.08 OrthoFinder output from all 47 species
LOC_Os12g42884.1 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.11 OrthoFinder output from all 47 species
Len_g19043 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Lfl_g06635 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
MA_10090g0010 ATCIMS, ATMS1, ATMETS methyl-tetrahydrofolate-dependent methionine synthase 0.04 OrthoFinder output from all 47 species
MA_10427606g0010 MS2, ATMS2 methyl-tetrahydrofolate-dependent methionine synthase 0.06 OrthoFinder output from all 47 species
MA_619693g0010 MS2, ATMS2 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.03 OrthoFinder output from all 47 species
MA_903046g0010 ATCIMS, ATMS1, ATMETS 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.06 OrthoFinder output from all 47 species
Mp1g04570.1 ATCIMS, ATMS1, ATMETS methyl-tetrahydrofolate-dependent methionine synthase 0.04 OrthoFinder output from all 47 species
Nbi_g11206 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Nbi_g24444 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Ore_g09430 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Pir_g03288 ATCIMS, ATMS1, ATMETS methyl-tetrahydrofolate-dependent methionine synthase &... 0.03 OrthoFinder output from all 47 species
Pir_g13317 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Pir_g66391 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Smo171028 ATCIMS, ATMS1, ATMETS Amino acid metabolism.biosynthesis.aspartate... 0.07 OrthoFinder output from all 47 species
Solyc10g081510.2.1 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.15 OrthoFinder output from all 47 species
Spa_g03147 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g06170 MS2, ATMS2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g14432 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g14699 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 47 species
Spa_g15406 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Spa_g41877 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Spa_g41923 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45631 MS2, ATMS2 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Spa_g55645 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e003281_P001 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.16 OrthoFinder output from all 47 species
Zm00001e005228_P001 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.08 OrthoFinder output from all 47 species
Zm00001e012368_P001 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity ISS Interproscan
MF GO:0005507 copper ion binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005777 peroxisome IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005829 cytosol ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
MF GO:0008705 methionine synthase activity IDA Interproscan
BP GO:0009086 methionine biosynthetic process ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
BP GO:0009651 response to salt stress IEP Interproscan
BP GO:0010043 response to zinc ion IEP Interproscan
CC GO:0016020 membrane IDA Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
CC GO:0048046 apoplast IDA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0002020 protease binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0004001 adenosine kinase activity IEP HCCA
MF GO:0004013 adenosylhomocysteinase activity IEP HCCA
MF GO:0004372 glycine hydroxymethyltransferase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
CC GO:0005753 mitochondrial proton-transporting ATP synthase complex IEP HCCA
CC GO:0005773 vacuole IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006166 purine ribonucleoside salvage IEP HCCA
BP GO:0006169 adenosine salvage IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006598 polyamine catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009163 nucleoside biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009310 amine catabolic process IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
CC GO:0009897 external side of plasma membrane IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
CC GO:0009930 longitudinal side of cell surface IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042402 cellular biogenic amine catabolic process IEP HCCA
BP GO:0042451 purine nucleoside biosynthetic process IEP HCCA
BP GO:0042455 ribonucleoside biosynthetic process IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043101 purine-containing compound salvage IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043174 nucleoside salvage IEP HCCA
CC GO:0043230 extracellular organelle IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
CC GO:0045259 proton-transporting ATP synthase complex IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046085 adenosine metabolic process IEP HCCA
BP GO:0046086 adenosine biosynthetic process IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
BP GO:0046129 purine ribonucleoside biosynthetic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0046508 hydrolase activity, acting on carbon-sulfur bonds IEP HCCA
CC GO:0046658 obsolete anchored component of plasma membrane IEP HCCA
BP GO:0046683 response to organophosphorus IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
CC GO:0065010 extracellular membrane-bounded organelle IEP HCCA
CC GO:0070062 extracellular exosome IEP HCCA
BP GO:0071241 cellular response to inorganic substance IEP HCCA
BP GO:0071248 cellular response to metal ion IEP HCCA
BP GO:0071281 cellular response to iron ion IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0080094 response to trehalose-6-phosphate IEP HCCA
BP GO:0080129 proteasome core complex assembly IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1903561 extracellular vesicle IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR013215 Cbl-indep_Met_Synth_N 3 315
IPR002629 Met_Synth_C/arc 432 755
No external refs found!