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AT5G16540 (ZFN3)


Aliases : ZFN3

Description : zinc finger nuclease 3


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G16540
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cba_g20823 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ceric.16G071600.1 ZFN1, Ceric.16G071600 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01017774001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Msp_g25561 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Nbi_g05812 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ore_g03222 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ppi_g12708 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sam_g15873 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sam_g21674 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Solyc11g008900.2.1 ZFN1, Solyc11g008900 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003677 DNA binding TAS Interproscan
MF GO:0004518 nuclease activity TAS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 90 114
IPR000571 Znf_CCCH 245 270
IPR000571 Znf_CCCH 291 316
IPR000571 Znf_CCCH 136 160
IPR000571 Znf_CCCH 45 68
No external refs found!