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  5. AT5G16400

AT5G16400 (TRXF2, ATF2)


Aliases : TRXF2, ATF2

Description : thioredoxin F2


Gene families : OG0001099 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001099_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G16400
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00119540 ATF1, TRXF1,... Redox homeostasis.chloroplast redox homeostasis.F-type... 0.03 OrthoFinder output from all 47 species
Adi_g003203 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06364 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00422 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.12 OrthoFinder output from all 47 species
Aob_g02927 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12466 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.06 OrthoFinder output from all 47 species
Cre05.g243050 TRXF2, ATF2 Redox homeostasis.chloroplast redox homeostasis.F-type... 0.18 OrthoFinder output from all 47 species
Dde_g25843 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01019070001 TRXF2, ATF2 Redox homeostasis.chloroplast redox homeostasis.F-type... 0.04 OrthoFinder output from all 47 species
Ore_g14018 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26787 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12320 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.08 OrthoFinder output from all 47 species
Pnu_g19425 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g00498 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30576 TRXF2, ATF2 F-type thioredoxin *(Trx-F) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g33020 ATF1, TRXF1 F-type thioredoxin *(Trx-F) & original description: none 0.05 OrthoFinder output from all 47 species
Smo110708 TRXF2, ATF2 Redox homeostasis.chloroplast redox homeostasis.F-type... 0.03 OrthoFinder output from all 47 species
Solyc05g056300.4.1 ATF1, TRXF1,... F-type thioredoxin 0.09 OrthoFinder output from all 47 species
Zm00001e027512_P002 TRXF2, ATF2,... F-type thioredoxin 0.05 OrthoFinder output from all 47 species
Zm00001e040421_P002 TRXF2, ATF2,... F-type thioredoxin 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005829 cytosol IDA Interproscan
MF GO:0008047 enzyme activator activity IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
BP GO:0043085 positive regulation of catalytic activity IDA Interproscan
BP GO:0043085 positive regulation of catalytic activity RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009744 response to sucrose IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009768 photosynthesis, light harvesting in photosystem I IEP HCCA
CC GO:0009783 photosystem II antenna complex IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010114 response to red light IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010196 nonphotochemical quenching IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030076 light-harvesting complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034285 response to disaccharide IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
BP GO:1990066 energy quenching IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 80 179
No external refs found!