Aliases : ATRAD21.3, SYN4
Description : sister chromatid cohesion 1 protein 4
Gene families : OG0001004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001004_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00066p00174610 | ATRAD21.3, SYN4,... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.12 | OrthoFinder output from all 47 species | |
Ala_g10417 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g22608 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.08 | OrthoFinder output from all 47 species | |
Als_g14846 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0367.g066982 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.06 | OrthoFinder output from all 47 species | |
Cba_g13918 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.31G015800.1 | ATRAD21.3, SYN4,... | mitotic-specific Kleisin-type component *(SCC1) of... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.39G042400.1 | ATRAD21.3, SYN4,... | not classified & original description: pacid=50582800... | 0.12 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000615.44 | SYN3, ATRAD21.2, ATSYN3 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g05845 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g30378 | ATRAD21.3, SYN4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g07032 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g09953 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g17726 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g29051 | ATRAD21.3, SYN4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01004000001 | ATRAD21.3, SYN4 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.1 | OrthoFinder output from all 47 species | |
GSVIVT01032038001 | SYN3, ATRAD21.2, ATSYN3 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | OrthoFinder output from all 47 species | |
Gb_15721 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component SCC1 of cohesin... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os01g67250.1 | ATRAD21.3, SYN4,... | mitotic-specific Kleisin-type component SCC1 of cohesin... | 0.07 | OrthoFinder output from all 47 species | |
Len_g49535 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g06270 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
MA_673714g0010 | ATRAD21.3, SYN4 | Sister chromatid cohesion 1 protein 4 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Mp5g04800.1 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component SCC1 of cohesin... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g09799 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g19687 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g11409 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g41601 | ATRAD21.3, SYN4 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g62398 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0046.g013377 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g27905 | No alias | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Smo122410 | ATRAD21.3, SYN4 | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder output from all 47 species | |
Solyc11g008740.2.1 | ATRAD21.3, SYN4,... | mitotic-specific Kleisin-type component SCC1 of cohesin... | 0.09 | OrthoFinder output from all 47 species | |
Spa_g54902 | ATRAD21.3, SYN4 | mitotic-specific Kleisin-type component *(SCC1) of... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e018959_P001 | ATRAD21.3, SYN4,... | mitotic-specific Kleisin-type component SCC1 of cohesin... | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e028559_P002 | ATRAD21.3, SYN4,... | mitotic-specific Kleisin-type component SCC1 of cohesin... | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e041125_P002 | AtRAD21.1, SYN2,... | Sister chromatid cohesion 1 protein 2 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0006346 | DNA methylation-dependent heterochromatin formation | RCA | Interproscan |
BP | GO:0007062 | sister chromatid cohesion | IMP | Interproscan |
BP | GO:0007062 | sister chromatid cohesion | ISS | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000278 | mitotic cell cycle | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0007049 | cell cycle | IEP | HCCA |
BP | GO:0007059 | chromosome segregation | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
CC | GO:0008278 | cohesin complex | IEP | HCCA |
BP | GO:0008283 | cell population proliferation | IEP | HCCA |
BP | GO:0009606 | tropism | IEP | HCCA |
BP | GO:0009628 | response to abiotic stimulus | IEP | HCCA |
BP | GO:0009629 | response to gravity | IEP | HCCA |
BP | GO:0009630 | gravitropism | IEP | HCCA |
BP | GO:0009736 | cytokinin-activated signaling pathway | IEP | HCCA |
BP | GO:0009739 | response to gibberellin | IEP | HCCA |
BP | GO:0009787 | regulation of abscisic acid-activated signaling pathway | IEP | HCCA |
BP | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway | IEP | HCCA |
BP | GO:0009799 | specification of symmetry | IEP | HCCA |
BP | GO:0009855 | determination of bilateral symmetry | IEP | HCCA |
BP | GO:0009887 | animal organ morphogenesis | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009890 | negative regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009908 | flower development | IEP | HCCA |
BP | GO:0009966 | regulation of signal transduction | IEP | HCCA |
BP | GO:0009968 | negative regulation of signal transduction | IEP | HCCA |
BP | GO:0010014 | meristem initiation | IEP | HCCA |
BP | GO:0010073 | meristem maintenance | IEP | HCCA |
BP | GO:0010154 | fruit development | IEP | HCCA |
BP | GO:0010410 | hemicellulose metabolic process | IEP | HCCA |
BP | GO:0010413 | glucuronoxylan metabolic process | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010638 | positive regulation of organelle organization | IEP | HCCA |
BP | GO:0010646 | regulation of cell communication | IEP | HCCA |
BP | GO:0010648 | negative regulation of cell communication | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0023051 | regulation of signaling | IEP | HCCA |
BP | GO:0023057 | negative regulation of signaling | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0032502 | developmental process | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | HCCA |
CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
BP | GO:0045491 | xylan metabolic process | IEP | HCCA |
BP | GO:0045492 | xylan biosynthetic process | IEP | HCCA |
BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0048364 | root development | IEP | HCCA |
BP | GO:0048366 | leaf development | IEP | HCCA |
BP | GO:0048367 | shoot system development | IEP | HCCA |
BP | GO:0048608 | reproductive structure development | IEP | HCCA |
BP | GO:0048731 | system development | IEP | HCCA |
BP | GO:0048856 | anatomical structure development | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051130 | positive regulation of cellular component organization | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
BP | GO:0090567 | reproductive shoot system development | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0099402 | plant organ development | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901419 | regulation of response to alcohol | IEP | HCCA |
BP | GO:1901420 | negative regulation of response to alcohol | IEP | HCCA |
BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1905957 | regulation of cellular response to alcohol | IEP | HCCA |
BP | GO:1905958 | negative regulation of cellular response to alcohol | IEP | HCCA |
BP | GO:2000023 | regulation of lateral root development | IEP | HCCA |
BP | GO:2000069 | regulation of post-embryonic root development | IEP | HCCA |
BP | GO:2000280 | regulation of root development | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No external refs found! |