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  5. AT5G11580

AT5G11580


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG0007411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11580
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Dcu_g09483 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0334.g027273 No alias not classified & original description: CDS=91-1338 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEP HCCA
MF GO:0003933 GTP cyclohydrolase activity IEP HCCA
MF GO:0003935 GTP cyclohydrolase II activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009649 entrainment of circadian clock IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019430 removal of superoxide radicals IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034599 cellular response to oxidative stress IEP HCCA
BP GO:0034614 cellular response to reactive oxygen species IEP HCCA
BP GO:0034644 cellular response to UV IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071457 cellular response to ozone IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071484 cellular response to light intensity IEP HCCA
BP GO:0071486 cellular response to high light intensity IEP HCCA
BP GO:0071493 cellular response to UV-B IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098869 cellular oxidant detoxification IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901701 cellular response to oxygen-containing compound IEP HCCA
BP GO:1990748 cellular detoxification IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 229 278
IPR000408 Reg_chr_condens 34 88
IPR000408 Reg_chr_condens 292 337
IPR000408 Reg_chr_condens 405 434
IPR000408 Reg_chr_condens 91 157
IPR000408 Reg_chr_condens 341 398
No external refs found!