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  5. AT5G11170

AT5G11170


Description : DEAD/DEAH box RNA helicase family protein


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11170

Target Alias Description ECC score Gene Family Method Actions
Adi_g085034 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33221 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09553.t1 Aspi01Gene09553 helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77168 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035843001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Gb_04230 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Gb_14863 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.06 OrthoFinder output from all 47 species
LOC_Os01g36890.2 LOC_Os01g36890 RNA helicase (Sub2). helicase component UAP56 of... 0.04 OrthoFinder output from all 47 species
Len_g18886 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Nbi_g43202 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07693 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c11_18810V3.1 Pp3c11_18810 DEAD/DEAH box RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Pp3c7_5890V3.1 Pp3c7_5890 DEAD/DEAH box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Ppi_g49064 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51328 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g061000.4.1 Solyc08g061000 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Spa_g47104 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026684_P001 Zm00001e026684 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IDA Interproscan
MF GO:0003697 single-stranded DNA binding IDA Interproscan
MF GO:0003725 double-stranded RNA binding IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
MF GO:0016887 ATP hydrolysis activity IDA Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 71 236
IPR001650 Helicase_C 276 383
No external refs found!