AT5G10570

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001330_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G10570

Target	Alias	Description	ECC score	Gene Family Method
Ala_g15617	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14438	ATICE1, ICE1, SCRM	transcription factor *(ICE1/2) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene03868.t2	SCRM2, ICE2,...	transcription factor *(ICE1/2) & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene29400.t1	SCRM2, ICE2,...	transcription factor *(ICE1/2) & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene66445.t1	ATICE1, ICE1,...	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0007.g010652	SCRM2, ICE2	bHLH-type transcription factor & original description: CDS=1-1947	0.01	OrthoFinder output from all 47 species
Ceric.16G023800.1	SCRM2, ICE2,...	transcription factor *(ICE1/2) & original description:...	0.02	OrthoFinder output from all 47 species
GSVIVT01032998001	ATICE1, ICE1, SCRM	External stimuli response.temperature.ICE-CBF cold...	0.02	OrthoFinder output from all 47 species
LOC_Os01g70310.2	ATICE1, ICE1,...	transcription factor (bHLH). transcription factor (ICE1\|2)	0.02	OrthoFinder output from all 47 species
LOC_Os11g32100.1	ATICE1, ICE1,...	transcription factor (bHLH). transcription factor (ICE1\|2)	0.02	OrthoFinder output from all 47 species
MA_10435231g0010	SCRM2, ICE2	transcription factor (bHLH). transcription factor (ICE1\|2)	0.02	OrthoFinder output from all 47 species
MA_448849g0010	ATICE1, ICE1, SCRM	transcription factor (bHLH). transcription factor (ICE1\|2)	0.03	OrthoFinder output from all 47 species
MA_57676g0010	SCRM2, ICE2	transcription factor (bHLH). transcription factor (ICE1\|2)	0.05	OrthoFinder output from all 47 species
Pir_g33626	bHLH093	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002409	SCRM2, ICE2	bHLH-type transcription factor & original description: CDS=1-732	0.01	OrthoFinder output from all 47 species
Zm00001e013304_P003	bHLH093, Zm00001e013304	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e021526_P001	ATICE1, ICE1,...	transcription factor (bHLH). transcription factor (ICE1\|2)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	153	196

External Links

No external refs found!

AT5G10570

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation