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  5. AT5G09280

AT5G09280


Description : Pectin lyase-like superfamily protein


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09280
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 OrthoFinder output from all 47 species
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AT1G11920 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G14420 AT59 Pectate lyase family protein 0.06 OrthoFinder output from all 47 species
AT1G67750 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT2G02720 No alias Pectate lyase family protein 0.06 OrthoFinder output from all 47 species
AT3G01270 No alias Pectate lyase family protein 0.05 OrthoFinder output from all 47 species
AT4G22080 RHS14 root hair specific 14 0.04 OrthoFinder output from all 47 species
AT5G15110 No alias Pectate lyase family protein 0.07 OrthoFinder output from all 47 species
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G63180 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g10720 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17935.t1 Aspi01Gene17935 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G053300.1 Ceric.14G053300 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G020500.1 Ceric.34G020500 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43009 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46894 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13672 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 OrthoFinder output from all 47 species
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os02g12300.1 AT59, LOC_Os02g12300 pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.07 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os06g05209.1 LOC_Os06g05209 pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os06g05260.1 LOC_Os06g05260 pectate lyase 0.05 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.05 OrthoFinder output from all 47 species
Len_g13639 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_474372g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_52869g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Nbi_g04193 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42589 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03369 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16922 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc03g058890.4.1 AT59, Solyc03g058890 pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc03g058910.3.1 AT59, Solyc03g058910 pectate lyase 0.06 OrthoFinder output from all 47 species
Solyc05g007080.4.1 AT59, Solyc05g007080 pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc06g071020.3.1 Solyc06g071020 pectate lyase 0.04 OrthoFinder output from all 47 species
Solyc09g061890.3.1 Solyc09g061890 pectate lyase 0.03 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07683 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07726 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.04 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005451 obsolete monoatomic cation:proton antiporter activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
MF GO:0051139 metal cation:proton antiporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 78 238
No external refs found!