AT5G08200


Description : peptidoglycan-binding LysM domain-containing protein


Gene families : OG0002173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002173_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G08200

Target Alias Description ECC score Gene Family Method Actions
Adi_g018896 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31710 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g51360.1 LOC_Os06g51360 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g17941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g39033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014455 No alias not classified & original description: CDS=206-1180 0.02 OrthoFinder output from all 47 species
Smo448329 No alias No description available 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0016998 cell wall macromolecule catabolic process ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010393 galacturonan metabolic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045488 pectin metabolic process IEP HCCA
BP GO:0045489 pectin biosynthetic process IEP HCCA
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0052325 cell wall pectin biosynthetic process IEP HCCA
BP GO:0052546 cell wall pectin metabolic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!