AT5G06300

Description : Putative lysine decarboxylase family protein

Gene families : OG0000622 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000622_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G06300
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00241960	evm_27.TU.AmTr_v1...	Phytohormones.cytokinin.synthesis.cytokinin phosphoribohydrolase	0.04	OrthoFinder output from all 47 species
AMTR_s00001p00242250	evm_27.TU.AmTr_v1...	Phytohormones.cytokinin.synthesis.cytokinin phosphoribohydrolase	0.09	OrthoFinder output from all 47 species
AMTR_s00224p00024190	LOG1, ATLOG1,...	Phytohormones.cytokinin.synthesis.cytokinin phosphoribohydrolase	0.03	OrthoFinder output from all 47 species
AT2G35990	No alias	Putative lysine decarboxylase family protein	0.03	OrthoFinder output from all 47 species
AT5G11950	No alias	Putative lysine decarboxylase family protein	0.03	OrthoFinder output from all 47 species
AT5G26140	LOG9, ATLOG9	Putative lysine decarboxylase family protein	0.04	OrthoFinder output from all 47 species
Aspi01Gene30015.t1	LOG1, ATLOG1,...	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene69230.t1	Aspi01Gene69230	cytokinin phosphoribohydrolase *(LOG) & original...	0.04	OrthoFinder output from all 47 species
Cba_g21576	No alias	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Cba_g22041	LOG1, ATLOG1	cytokinin phosphoribohydrolase *(LOG) & original...	0.04	OrthoFinder output from all 47 species
Ceric.35G020400.1	Ceric.35G020400	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g16477	No alias	cytokinin phosphoribohydrolase *(LOG) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g31708	No alias	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Gb_24266	LOG1, ATLOG1	cytokinin phosphoribohydrolase	0.03	OrthoFinder output from all 47 species
Gb_31493	LOG1, ATLOG1	cytokinin phosphoribohydrolase	0.02	OrthoFinder output from all 47 species
LOC_Os01g51210.1	LOC_Os01g51210	cytokinin phosphoribohydrolase	0.03	OrthoFinder output from all 47 species
LOC_Os03g64070.1	LOC_Os03g64070	cytokinin phosphoribohydrolase	0.03	OrthoFinder output from all 47 species
LOC_Os05g46360.1	LOC_Os05g46360	cytokinin phosphoribohydrolase	0.04	OrthoFinder output from all 47 species
LOC_Os05g51390.1	LOC_Os05g51390	cytokinin phosphoribohydrolase	0.03	OrthoFinder output from all 47 species
Len_g28738	LOG1, ATLOG1	cytokinin phosphoribohydrolase *(LOG) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g00449	LOG1, ATLOG1	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g11807	No alias	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g12636	No alias	cytokinin phosphoribohydrolase *(LOG) & original...	0.02	OrthoFinder output from all 47 species
Spa_g11774	No alias	cytokinin phosphoribohydrolase *(LOG) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e005344_P001	Zm00001e005344	cytokinin phosphoribohydrolase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	ISS	Interproscan
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transmembrane transport	RCA	Interproscan
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	ISS	Interproscan
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098661	inorganic anion transmembrane transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902025	nitrate import	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005275	amine transmembrane transporter activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006829	zinc ion transport	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031100	LOG_fam	53	183

External Links

No external refs found!

AT5G06300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation