AT5G05140

Description : Transcription elongation factor (TFIIS) family protein

Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G05140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00101p00137160	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Ala_g36011	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0073.g037267	No alias	not classified & original description: CDS=379-1959	0.04	OrthoFinder output from all 47 species
Cba_g69237	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Ceric.30G069800.1	Ceric.30G069800	not classified & original description: pacid=50608596...	0.05	OrthoFinder output from all 47 species
Dac_g15449	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g24083	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Dcu_g37603	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Dde_g00740	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g23477	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
LOC_Os05g34210.1	LOC_Os05g34210	component MED26 of MEDIATOR transcription co-activator complex	0.04	OrthoFinder output from all 47 species
Lfl_g01694	No alias	component *(MED26) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Lfl_g04807	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Msp_g13784	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g27629	No alias	component *(MED26) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Ppi_g17469	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo404483	No alias	Probable mediator of RNA polymerase II transcription...	0.03	OrthoFinder output from all 47 species
Zm00001e010865_P001	Zm00001e010865	component MED26 of MEDIATOR transcription co-activator complex	0.04	OrthoFinder output from all 47 species
Zm00001e027059_P003	Zm00001e027059	component MED26 of MEDIATOR transcription co-activator complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009620	response to fungus	RCA	Interproscan
BP	GO:0009694	jasmonic acid metabolic process	None	Extended
BP	GO:0009695	jasmonic acid biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0009268	response to pH	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0010447	response to acidic pH	IEP	HCCA
MF	GO:0010542	nitrate efflux transmembrane transporter activity	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015513	high-affinity secondary active nitrite transmembrane transporter activity	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0015706	nitrate transmembrane transport	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
MF	GO:0031176	endo-1,4-beta-xylanase activity	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
MF	GO:0097599	xylanase activity	IEP	HCCA
BP	GO:0098661	inorganic anion transmembrane transport	IEP	HCCA
BP	GO:1902025	nitrate import	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017923	TFIIS_N	163	211

External Links

No external refs found!

AT5G05140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation