AT5G01860

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G01860

Target	Alias	Description	ECC score	Gene Family Method
AT2G42410	ZFP11, ATZFP11	zinc finger protein 11	0.04	OrthoFinder output from all 47 species
Dcu_g19018	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01009401001	ZFP7	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	OrthoFinder output from all 47 species
LOC_Os03g11680.1	ZFP8, LOC_Os03g11680	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os12g42250.1	LOC_Os12g42250	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Nbi_g22027	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e030783_P001	ZFP8, Zm00001e030783	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e036220_P001	ZFP8, Zm00001e036220	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G01860

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation