AT4G38960

Description : B-box type zinc finger family protein

Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G38960
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00204180	STO,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AMTR_s00182p00043350	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AT1G75540	STH2	salt tolerance homolog2	0.04	OrthoFinder output from all 47 species
AT4G39070	No alias	B-box zinc finger family protein	0.04	OrthoFinder output from all 47 species
Adi_g057497	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g04585	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g02369	STO	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g14676	STO	BBX class-IV transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g11974	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01696	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62651.t1	Aspi01Gene62651	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0185.g056620	STO	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.11G021600.1	Ceric.11G021600	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.27G000600.1	LZF1, STH3,...	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g18562	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04609	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g39360.1	STH, LOC_Os02g39360	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
LOC_Os02g43170.1	LOC_Os02g43170	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Lfl_g32894	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g21663	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Msp_g35258	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g17775	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g37373	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g00324	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g31979	STO	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32457	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g39847	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g41002	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g110180.4.1	Solyc01g110180	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
Solyc02g084420.3.1	Solyc02g084420	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Solyc07g062160.3.1	LZF1, STH3,...	transcription factor (BBX-DBB)	0.01	OrthoFinder output from all 47 species
Solyc12g089240.2.1	STH2, Solyc12g089240	transcription factor (BBX-DBB)	0.05	OrthoFinder output from all 47 species
Tin_g14964	STH	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007388_P002	STH2, Zm00001e007388	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
Zm00001e007720_P001	STO, Zm00001e007720	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species
Zm00001e022915_P001	STO, Zm00001e022915	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species
Zm00001e041335_P001	Zm00001e041335	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0007623	circadian rhythm	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	RCA	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009813	flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004506	squalene monooxygenase activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0005987	sucrose catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0006722	triterpenoid metabolic process	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015675	nickel cation transport	IEP	HCCA
MF	GO:0015926	glucosidase activity	IEP	HCCA
BP	GO:0016104	triterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	HCCA
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	HCCA
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0046246	terpene biosynthetic process	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0051761	sesquiterpene metabolic process	IEP	HCCA
BP	GO:0051762	sesquiterpene biosynthetic process	IEP	HCCA
BP	GO:0071836	nectar secretion	IEP	HCCA
MF	GO:0090599	alpha-glucosidase activity	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	4	42
IPR000315	Znf_B-box	52	91

External Links

No external refs found!

AT4G38960

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation