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  5. AT4G38030

AT4G38030


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G38030

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Aspi01Gene46069.t1 Aspi01Gene46069 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g45652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g20220.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g11130.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc04g076640.3.1 Solyc04g076640 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc05g051350.2.1 Solyc05g051350 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004364 glutathione transferase activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0009705 plant-type vacuole membrane IEP HCCA
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0046283 anthocyanin-containing compound metabolic process IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
BP GO:1900384 regulation of flavonol biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 38 236
IPR029413 RG-lyase_II 388 460
IPR029411 RG-lyase_III 474 661
No external refs found!