AT4G37890 (EDA40)

Aliases : EDA40

Description : Zinc finger (C3HC4-type RING finger) family protein

Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G37890

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00020480	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
AT5G49665	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.05	OrthoFinder output from all 47 species
Aspi01Gene22775.t1	Aspi01Gene22775	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.24G014600.1	Ceric.24G014600	not classified & original description: pacid=50629291...	0.03	OrthoFinder output from all 47 species
Cre12.g500550	No alias	No description available	0.02	OrthoFinder output from all 47 species
Ehy_g07928	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10552	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g25091	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009240001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
GSVIVT01019190001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_01603	No alias	ubiquitin protein ligase (WAV3)	0.05	OrthoFinder output from all 47 species
LOC_Os10g32740.1	LOC_Os10g32740	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Len_g21346	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g24093	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_2719537g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g08356	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g15784	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17901	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005076	No alias	not classified & original description: CDS=439-2763	0.03	OrthoFinder output from all 47 species
Solyc05g056140.4.1	Solyc05g056140	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Spa_g06760	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g14647	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g02842	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e004620_P001	Zm00001e004620	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009308	amine metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009690	cytokinin metabolic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010197	polar nucleus fusion	IMP	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0005199	structural constituent of cell wall	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008395	steroid hydroxylase activity	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010268	brassinosteroid homeostasis	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016805	dipeptidase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0042814	monopolar cell growth	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0055088	lipid homeostasis	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002035	VWF_A	357	464
IPR001841	Znf_RING	169	198

External Links

No external refs found!

AT4G37890 (EDA40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation