AT4G36930 (SPT)

Aliases : SPT

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G36930

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00241810	CIB1,...	External stimuli response.light.UV-A/blue...	0.02	OrthoFinder output from all 47 species
AMTR_s00022p00228970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.01	OrthoFinder output from all 47 species
AT1G26260	CIB5	cryptochrome-interacting basic-helix-loop-helix 5	0.03	OrthoFinder output from all 47 species
AT1G29950	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT1G66470	RHD6	ROOT HAIR DEFECTIVE6	0.01	OrthoFinder output from all 47 species
AT2G42280	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
AT5G01305	No alias	No description available	0.03	OrthoFinder output from all 47 species
AT5G09750	HEC3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.01	OrthoFinder output from all 47 species
Adi_g048981	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Adi_g056069	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g112806	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aev_g17417	CIB1	regulatory protein (CIB) of blue light perception &...	0.01	OrthoFinder output from all 47 species
Ala_g07900	LRL3	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g12396	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g01664	No alias	regulatory protein (CIB) of blue light perception &...	0.01	OrthoFinder output from all 47 species
Als_g05647	No alias	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g61959	PIL5, PIF1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g10628	LRL3	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g18590	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g40845	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g35268	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05129.t1	RSL2, Aspi01Gene05129	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene05629.t1	LRL3, Aspi01Gene05629	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene25247.t2	LRL3, Aspi01Gene25247	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene32584.t1	LRL3, Aspi01Gene32584	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene35112.t1	SPT, Aspi01Gene35112	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene35709.t2	Aspi01Gene35709	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene62580.t1	Aspi01Gene62580	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72623.t1	Aspi01Gene72623	regulatory protein (CIB) of blue light perception &...	0.01	OrthoFinder output from all 47 species
Azfi_s0197.g057308	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Cba_g16021	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ceric.04G038900.1	LRL3, Ceric.04G038900	bHLH-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Ceric.04G045500.1	Ceric.04G045500	bHLH-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Ceric.1Z049600.1	Ceric.1Z049600	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dac_g36885	HEC1	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g41029	RSL2	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g08844	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g09859	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g17261	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g17517	HEC3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g25890	RHD6	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g12584	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03657	LRL3	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g05277	HEC2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05767	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
GSVIVT01008628001	No alias	External stimuli response.light.UV-A/blue...	0.01	OrthoFinder output from all 47 species
GSVIVT01009467001	SPT	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
GSVIVT01023783001	CIB1	External stimuli response.light.UV-A/blue...	0.06	OrthoFinder output from all 47 species
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	OrthoFinder output from all 47 species
GSVIVT01031338001	PIF3, POC1, PAP3	External stimuli response.light.red/far red light.PIF...	0.02	OrthoFinder output from all 47 species
Gb_05320	LRL3	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Gb_21260	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
LOC_Os01g43680.3	LOC_Os01g43680	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
LOC_Os01g61480.1	LOC_Os01g61480	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
LOC_Os02g47660.1	CIB1, LOC_Os02g47660	transcription factor (bHLH). transcriptional regulator (CIB)	0.01	OrthoFinder output from all 47 species
LOC_Os04g41229.1	LOC_Os04g41229	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os05g46370.1	LOC_Os05g46370	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
LOC_Os06g08500.1	LRL3, LOC_Os06g08500	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
LOC_Os09g28210.1	HEC1, LOC_Os09g28210	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
Lfl_g04933	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g21546	UNE12	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g26119	LRL3	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g39521	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Mp3g23300.1	HEC3	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Msp_g15574	No alias	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g46877	RSL2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g08799	No alias	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g44899	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01002	LRL1	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g06619	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Pir_g16587	No alias	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g20190	BPEp, ZCW32, BPE, BPEub	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pir_g39906	PIL1	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g41705	CIB1	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pir_g45935	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pnu_g21397	RSL4	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g27016	LRL3	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Pp3c3_8460V3.1	RSL2, Pp3c3_8460	ROOT HAIR DEFECTIVE 6-LIKE 2	0.01	OrthoFinder output from all 47 species
Ppi_g17267	LRL3	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g62088	CIB1	regulatory protein (CIB) of blue light perception &...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011126	SPT	bHLH-type transcription factor & original description: CDS=1-1488	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013028	No alias	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Smo403406	HEC2	RNA biosynthesis.transcriptional activation.bHLH...	0.01	OrthoFinder output from all 47 species
Smo443113	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Solyc02g093280.2.1	SPT, Solyc02g093280	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc03g119390.4.1	BEE3, Solyc03g119390	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
Solyc05g006650.3.1	Solyc05g006650	transcription factor (bHLH). transcriptional regulator (CIB)	0.01	OrthoFinder output from all 47 species
Spa_g14752	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g30541	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g31230	No alias	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g51777	No alias	regulatory protein (CIB) of blue light perception &...	0.01	OrthoFinder output from all 47 species
Zm00001e006917_P001	PIL5, PIF1,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e010060_P001	Zm00001e010060	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e011084_P002	Zm00001e011084	transcription factor (bHLH). transcriptional regulator (CIB)	0.01	OrthoFinder output from all 47 species
Zm00001e011866_P002	UNE12, Zm00001e011866	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e015045_P002	Zm00001e015045	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
Zm00001e018946_P001	Zm00001e018946	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e019392_P001	Zm00001e019392	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
Zm00001e021883_P001	HEC3, Zm00001e021883	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e029147_P001	HEC3, Zm00001e029147	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e030725_P001	Zm00001e030725	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
Zm00001e030754_P001	LRL1, Zm00001e030754	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e032280_P001	Zm00001e032280	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e032950_P002	UNE12, Zm00001e032950	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
Zm00001e041668_P001	PIL5, PIF1,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IMP	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007623	circadian rhythm	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	IMP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009908	flower development	NAS	Interproscan
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010114	response to red light	IMP	Interproscan
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010187	negative regulation of seed germination	IMP	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	IMP	Interproscan
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	201	247

External Links

No external refs found!

AT4G36930 (SPT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation