AT4G36650 (ATPBRP, PBRP)

Aliases : ATPBRP, PBRP

Description : plant-specific TFIIB-related protein

Gene families : OG0008240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008240_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G36650
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
Aev_g01533	ATPBRP, PBRP	transcription initiation factor *(BRP1) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g01784	ATPBRP, PBRP	transcription initiation factor *(BRP1) & original...	0.03	OrthoFinder output from all 47 species
Dde_g05365	ATPBRP, PBRP	transcription initiation factor *(BRP1) & original...	0.03	OrthoFinder output from all 47 species
Pir_g15346	ATPBRP, PBRP	transcription initiation factor *(BRP1) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e038795_P001	ATPBRP, PBRP,...	transcription initiation factor (BRP1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000182	rDNA binding	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009527	plastid outer membrane	IDA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010440	stomatal lineage progression	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013150	TFIIB_cyclin	233	303
IPR013150	TFIIB_cyclin	139	207

External Links

No external refs found!

AT4G36650 (ATPBRP, PBRP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation