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AT4G36590


Description : MADS-box transcription factor family protein


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G36590
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00262770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AT2G24840 AGL61, DIA AGAMOUS-like 61 0.04 OrthoFinder output from all 47 species
AT3G04100 AGL57 AGAMOUS-like 57 0.08 OrthoFinder output from all 47 species
AT3G66656 AGL91 AGAMOUS-like 91 0.07 OrthoFinder output from all 47 species
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT5G46320 No alias MADS-box family protein 0.14 OrthoFinder output from all 47 species
AT5G60440 AGL62 AGAMOUS-like 62 0.04 OrthoFinder output from all 47 species
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g44649 AGL6 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27482 AGL104 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Solyc01g106720.1.1 AGL62, Solyc01g106720 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e027852_P001 AGL62, Zm00001e027852 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e031267_P003 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e040374_P001 AGL48, Zm00001e040374 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0080113 regulation of seed growth IEP HCCA
BP GO:2000014 regulation of endosperm development IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 15 62
No external refs found!