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  5. AT4G36130

AT4G36130


Description : Ribosomal protein L2 family


Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G36130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Adi_g047038 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g086062 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g113531 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aev_g02982 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g12035 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g27868 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g43864 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g63414 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12168 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Aspi01Gene42112.t1 Aspi01Gene42112 component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.01G015000.1 Ceric.01G015000 component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.30G024600.1 Ceric.30G024600 component *(uL2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020965.22 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
Cre12.g535851 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 OrthoFinder output from all 47 species
Dac_g02131 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dcu_g05184 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01014552001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
LOC_Os12g38000.1 LOC_Os12g38000 component RPL8 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Len_g27953 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10431163g0010 No alias component RPL8 of LSU proteome component 0.08 OrthoFinder output from all 47 species
MA_219740g0010 No alias component RPL8 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Mp7g01860.1 EMB2296 component RPL8 of LSU proteome component 0.25 OrthoFinder output from all 47 species
Mp7g08730.1 EMB2296 component RPL8 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Msp_g07633 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Nbi_g25715 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ore_g18846 EMB2296 component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g18847 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g12813 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c12_10200V3.1 EMB2296, Pp3c12_10200 Ribosomal protein L2 family 0.09 OrthoFinder output from all 47 species
Pp3c13_23630V3.1 EMB2296, Pp3c13_23630 Ribosomal protein L2 family 0.1 OrthoFinder output from all 47 species
Pp3c4_12690V3.1 EMB2296, Pp3c4_12690 Ribosomal protein L2 family 0.16 OrthoFinder output from all 47 species
Pp3c4_12720V3.1 EMB2296, Pp3c4_12720 Ribosomal protein L2 family 0.16 OrthoFinder output from all 47 species
Ppi_g33659 EMB2296 component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g60464 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022633 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g13695 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Sam_g13696 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Smo170971 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc07g063890.2.1 Solyc07g063890 component RPL8 of LSU proteome component 0.19 OrthoFinder output from all 47 species
Solyc12g005330.2.1 Solyc12g005330 component RPL8 of LSU proteome component 0.27 OrthoFinder output from all 47 species
Spa_g30832 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Spa_g39107 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g52209 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Tin_g00494 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Zm00001e002931_P001 EMB2296, Zm00001e002931 component RPL8 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Zm00001e018178_P001 EMB2296, Zm00001e018178 component RPL8 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Zm00001e033350_P001 EMB2296, Zm00001e033350 component RPL8 of LSU proteome component 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004152 dihydroorotate dehydrogenase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
MF GO:0016018 cyclosporin A binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0060688 regulation of morphogenesis of a branching structure IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0090506 axillary shoot meristem initiation IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1905428 regulation of plant organ formation IEP HCCA
BP GO:2000032 regulation of secondary shoot formation IEP HCCA
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 13 89
IPR022669 Ribosomal_L2_C 98 230
No external refs found!