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AT4G35785


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0001089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G35785

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00209460 evm_27.TU.AmTr_v1... Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Als_g20762 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05560 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27353 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52073 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g15180.1 No alias Serine/arginine-rich splicing factor SR45a... 0.03 OrthoFinder output from all 47 species
Ore_g41394 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31276 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e022330_P003 Zm00001e022330 Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006598 polyamine catabolic process IEP HCCA
BP GO:0009310 amine catabolic process IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042402 cellular biogenic amine catabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 73 142
No external refs found!