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  5. AT4G35540

AT4G35540


Description : zinc ion binding;transcription regulators


Gene families : OG0006535 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006535_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G35540
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Adi_g088440 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46973.t1 Aspi01Gene46973 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g006177.2.1 Solyc03g006177 Plant-specific TFIIB-related protein PTF2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0001093 TFIIB-class transcription factor binding IDA Interproscan
MF GO:0003690 double-stranded DNA binding IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009846 pollen germination IMP Interproscan
BP GO:0010440 stomatal lineage progression RCA Interproscan
MF GO:0070063 RNA polymerase binding IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000412 histone peptidyl-prolyl isomerization IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR013137 Znf_TFIIB 1 35
No external refs found!