AT4G33070

Description : Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Gene families : OG0001402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001402_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G33070
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
Dcu_g26693	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g41262	PDC2	EC_4.1 carbon-carbon lyase & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g44282	PDC2	EC_4.1 carbon-carbon lyase & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g50750	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01003940001	PDC2	Carbohydrate metabolism.fermentation.alcoholic...	0.14	OrthoFinder output from all 47 species
GSVIVT01021184001	PDC2	Carbohydrate metabolism.fermentation.alcoholic...	0.05	OrthoFinder output from all 47 species
Gb_33733	PDC2	pyruvate decarboxylase	0.07	OrthoFinder output from all 47 species
Gb_33735	PDC2	pyruvate decarboxylase	0.05	OrthoFinder output from all 47 species
LOC_Os03g18220.1	LOC_Os03g18220	pyruvate decarboxylase	0.16	OrthoFinder output from all 47 species
LOC_Os05g39310.1	LOC_Os05g39310	pyruvate decarboxylase	0.07	OrthoFinder output from all 47 species
LOC_Os05g39320.1	LOC_Os05g39320	pyruvate decarboxylase	0.06	OrthoFinder output from all 47 species
MA_127819g0010	No alias	pyruvate decarboxylase	0.04	OrthoFinder output from all 47 species
MA_398390g0010	No alias	pyruvate decarboxylase	0.03	OrthoFinder output from all 47 species
Pnu_g05812	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g005110.3.1	PDC2, Solyc09g005110	pyruvate decarboxylase	0.03	OrthoFinder output from all 47 species
Solyc10g076510.2.1	Solyc10g076510	pyruvate decarboxylase	0.23	OrthoFinder output from all 47 species
Zm00001e001325_P003	Zm00001e001325	pyruvate decarboxylase	0.11	OrthoFinder output from all 47 species
Zm00001e025833_P001	PDC2, Zm00001e025833	pyruvate decarboxylase	0.04	OrthoFinder output from all 47 species
Zm00001e027278_P002	Zm00001e027278	pyruvate decarboxylase	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004737	pyruvate decarboxylase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009061	anaerobic respiration	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010039	response to iron ion	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
BP	GO:0018126	protein hydroxylation	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034059	response to anoxia	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0071241	cellular response to inorganic substance	IEP	HCCA
BP	GO:0071248	cellular response to metal ion	IEP	HCCA
BP	GO:0071281	cellular response to iron ion	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071398	cellular response to fatty acid	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071732	cellular response to nitric oxide	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012001	Thiamin_PyroP_enz_TPP-bd_dom	46	213
IPR012000	Thiamin_PyroP_enz_cen_dom	243	357
IPR011766	TPP_enzyme_TPP-bd	453	577

External Links

No external refs found!

AT4G33070

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation