Aliases : PKR2
Description : chromatin remodeling factor, putative
Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00053p00098350 | CHR5,... | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g093949 | CHR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g03868 | CHR11 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g20612 | PKR1, CHR4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g29249 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g05226 | CHR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g06161 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aop_g08885 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0754.g085337 | No alias | not classified & original description: CDS=1-1965 | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000350.9 | PKR2 | CHD3-type chromatin-remodeling factor PICKLE... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000989.25 | PKR1, CHR4 | CHD3-type chromatin-remodeling factor CHR7... | 0.02 | OrthoFinder output from all 47 species | |
Cre03.g158550 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.01 | OrthoFinder output from all 47 species | |
Cre09.g390000 | CHR17 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.01 | OrthoFinder output from all 47 species | |
Gb_16888 | CHR01, CHR1,... | ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g65850.1 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g23435 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g26878 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g12699 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g15409 | CHR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g29413 | CHR11 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g17278 | No alias | chromatin remodeling factor *(DDM1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g090650.1.1 | Solyc01g090650 | chromatin remodeling factor (Alc) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e011541_P001 | CHR01, CHR1,... | chromatin remodeling factor (DDM1) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000156 | phosphorelay response regulator activity | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
MF | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005200 | structural constituent of cytoskeleton | IEP | HCCA |
CC | GO:0005856 | cytoskeleton | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
MF | GO:0009008 | DNA-methyltransferase activity | IEP | HCCA |
BP | GO:0009691 | cytokinin biosynthetic process | IEP | HCCA |
MF | GO:0009824 | AMP dimethylallyltransferase activity | IEP | HCCA |
CC | GO:0015629 | actin cytoskeleton | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
BP | GO:0042991 | obsolete transcription factor import into nucleus | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0052622 | ATP dimethylallyltransferase activity | IEP | HCCA |
MF | GO:0052623 | ADP dimethylallyltransferase activity | IEP | HCCA |
BP | GO:0060688 | regulation of morphogenesis of a branching structure | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
BP | GO:1905428 | regulation of plant organ formation | IEP | HCCA |
BP | GO:2000032 | regulation of secondary shoot formation | IEP | HCCA |
No external refs found! |