AT4G30700

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G30700

Target	Alias	Description	ECC score	Gene Family Method
AT3G25970	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
AT4G08210	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G18520	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	OrthoFinder output from all 47 species
AT5G59200	OTP80	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	OrthoFinder output from all 47 species
Adi_g001705	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g007616	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g009482	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g013922	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g018291	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g052188	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058519	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g067809	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g068892	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g069256	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g111309	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g38515	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g26540	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g30166	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52586.t1	Aspi01Gene52586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene57285.t1	Aspi01Gene57285	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72347.t1	Aspi01Gene72347	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g06983	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G069300.1	OTP86, Ceric.09G069300	not classified & original description: pacid=50588354...	0.03	OrthoFinder output from all 47 species
Dac_g40922	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g38525	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01025574001	No alias	Pentatricopeptide repeat-containing protein At2g37320...	0.04	OrthoFinder output from all 47 species
Len_g01393	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g07300	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g17343	VAC1, ECB2, ATECB2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g09475	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g20192	OTP84	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g05347	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g35307	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g06676	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g63901	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g29768	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g07203	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14564	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g37702	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g39247	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo115590	REME1	Pentatricopeptide repeat-containing protein At4g14820...	0.03	OrthoFinder output from all 47 species
Smo82024	CRR22	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	OrthoFinder output from all 47 species
Smo98551	No alias	Pentatricopeptide repeat-containing protein At4g14820...	0.04	OrthoFinder output from all 47 species
Spa_g23985	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g24048	CRR2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g05462	OTP84	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g22810	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g44700	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	IMP	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IMP	Interproscan
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	659	782
IPR002885	Pentatricopeptide_repeat	288	316
IPR002885	Pentatricopeptide_repeat	187	215
IPR002885	Pentatricopeptide_repeat	160	183
IPR002885	Pentatricopeptide_repeat	387	431
IPR002885	Pentatricopeptide_repeat	484	531

External Links

No external refs found!

AT4G30700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation