AT4G29190

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29190

Target	Alias	Description	ECC score	Gene Family Method
Adi_g046911	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Adi_g075797	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ala_g05322	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aob_g20797	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aspi01Gene28172.t1	Aspi01Gene28172	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Aspi01Gene43293.t1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Aspi01Gene68944.t1	Aspi01Gene68944	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Azfi_s0076.g037758	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Azfi_s0225.g058948	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Ceric.05G100900.1	Ceric.05G100900	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Ceric.17G002100.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Ceric.33G056800.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001056.12	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre07.g326150	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.02	OrthoFinder output from all 47 species
Dcu_g07562	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dde_g24267	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dde_g27978	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ehy_g05999	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Ehy_g09166	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
GSVIVT01035331001	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.03	OrthoFinder output from all 47 species
LOC_Os05g45020.1	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
Len_g18302	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Lfl_g02270	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Lfl_g28211	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g13828	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Nbi_g05906	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Nbi_g10512	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Nbi_g13365	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Nbi_g22895	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.06	OrthoFinder output from all 47 species
Nbi_g28683	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g29048	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pir_g16628	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Pir_g43895	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pnu_g30312	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002884	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004066	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017049	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0094.g019174	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Sam_g03886	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Smo441947	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.07	OrthoFinder output from all 47 species
Smo443970	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.04	OrthoFinder output from all 47 species
Spa_g15791	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Spa_g53900	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Tin_g14922	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Zm00001e027132_P001	Zm00001e027132	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
Zm00001e032199_P001	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	124	144

External Links

No external refs found!

AT4G29190

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation