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  5. AT4G28811

AT4G28811


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G28811

Target Alias Description ECC score Gene Family Method Actions
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G01305 No alias No description available 0.05 OrthoFinder output from all 47 species
AT5G61270 PIF7 phytochrome-interacting factor7 0.05 OrthoFinder output from all 47 species
Aev_g19667 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g10601 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18353 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63646.t1 LRL3, Aspi01Gene63646 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0083.g038807 HEC1 bHLH-type transcription factor & original description: CDS=1-1287 0.04 OrthoFinder output from all 47 species
Ceric.23G058700.1 Ceric.23G058700 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g15552 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01030333001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 OrthoFinder output from all 47 species
Gb_06182 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Gb_22201 LRL3 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_96671g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Pir_g47068 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57337 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11105 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17267 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23139 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g088790.3.1 HEC2, Solyc12g088790 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Spa_g19005 LRL1 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0005982 starch metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008429 phosphatidylethanolamine binding IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009743 response to carbohydrate IEP HCCA
BP GO:0009744 response to sucrose IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010555 response to mannitol IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0034285 response to disaccharide IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0090344 obsolete negative regulation of cell aging IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 361 407
No external refs found!