AT4G28660 (PSB28)


Aliases : PSB28

Description : photosystem II reaction center PSB28 protein


Gene families : OG0005594 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005594_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G28660

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00160690 PSB28,... Photosynthesis.photophosphorylation.photosystem... 0.09 OrthoFinder output from all 47 species
Adi_g008382 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Adi_g110522 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Aev_g03543 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Ala_g08604 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.1 OrthoFinder output from all 47 species
Als_g06924 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Aob_g06334 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Aop_g06562 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene01403.t1 PSB28, Aspi01Gene01403 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Cba_g06286 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Cba_g20107 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G032000.1 PSB28, Ceric.07G032000 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Cre10.g440450 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Dac_g09174 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g46324 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Dde_g31782 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g01982 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01028434001 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.1 OrthoFinder output from all 47 species
Gb_39548 PSB28 Psb28 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species
LOC_Os01g71190.1 PSB28, LOC_Os01g71190 Psb28 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
Len_g02114 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.07 OrthoFinder output from all 47 species
Lfl_g34843 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
MA_18349g0010 PSB28 Psb28 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Mp2g14630.1 PSB28 Psb28 protein involved in PS-II assembly 0.14 OrthoFinder output from all 47 species
Msp_g12017 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Msp_g18510 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Ore_g32149 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.09 OrthoFinder output from all 47 species PNG
Pir_g15698 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g01103 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g14394 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022654 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
Sam_g09153 No alias protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Smo85520 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Solyc09g064500.3.1 PSB28, Solyc09g064500 Psb28 protein involved in PS-II assembly 0.14 OrthoFinder output from all 47 species
Spa_g02888 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Spa_g21623 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Tin_g00351 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.09 OrthoFinder output from all 47 species
Zm00001e018703_P001 PSB28, Zm00001e018703 Psb28 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process RCA Interproscan
MF GO:0003674 molecular_function ND Interproscan
BP GO:0006655 phosphatidylglycerol biosynthetic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009539 photosystem II reaction center ISS Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
BP GO:0015979 photosynthesis ISS Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0042335 cuticle development RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006569 tryptophan catabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006636 unsaturated fatty acid biosynthetic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009074 aromatic amino acid family catabolic process IEP HCCA
BP GO:0009106 lipoate metabolic process IEP HCCA
BP GO:0009108 obsolete coenzyme biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009409 response to cold IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009543 chloroplast thylakoid lumen IEP HCCA
CC GO:0009573 chloroplast ribulose bisphosphate carboxylase complex IEP HCCA
BP GO:0009595 detection of biotic stimulus IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009683 indoleacetic acid metabolic process IEP HCCA
BP GO:0009684 indoleacetic acid biosynthetic process IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009696 salicylic acid metabolic process IEP HCCA
BP GO:0009697 salicylic acid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009773 photosynthetic electron transport in photosystem I IEP HCCA
BP GO:0009851 auxin biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
CC GO:0010007 magnesium chelatase complex IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010114 response to red light IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0017014 protein nitrosylation IEP HCCA
BP GO:0018119 peptidyl-cysteine S-nitrosylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018198 peptidyl-cysteine modification IEP HCCA
BP GO:0018958 phenol-containing compound metabolic process IEP HCCA
BP GO:0019253 reductive pentose-phosphate cycle IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019685 photosynthesis, dark reaction IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031978 plastid thylakoid lumen IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033559 unsaturated fatty acid metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034644 cellular response to UV IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042436 indole-containing compound catabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042537 benzene-containing compound metabolic process IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0043900 obsolete regulation of multi-organism process IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046189 phenol-containing compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
CC GO:0048046 apoplast IEP HCCA
CC GO:0048492 ribulose bisphosphate carboxylase complex IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070141 response to UV-A IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071484 cellular response to light intensity IEP HCCA
BP GO:0071486 cellular response to high light intensity IEP HCCA
BP GO:0071492 cellular response to UV-A IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0080167 response to karrikin IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR005610 PSII_Psb28_class-1 74 179
No external refs found!