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  5. AT4G28088

AT4G28088


Description : Low temperature and salt responsive protein family


Gene families : OG0001355 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001355_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G28088
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Adi_g123534 RCI2A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g30448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15385 RCI2B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_22723 No alias Hydrophobic protein RCI2A OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g17790.1 LOC_Os03g17790 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os06g44220.1 LOC_Os06g44220 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10268593g0010 RCI2B no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_12178g0010 RCI2A no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021294 No alias not classified & original description: CDS=457-624 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000162 tryptophan biosynthetic process IEP HCCA
MF GO:0000257 nitrilase activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003995 acyl-CoA dehydrogenase activity IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004834 tryptophan synthase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009625 response to insect IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009753 response to jasmonic acid IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009830 cell wall modification involved in abscission IEP HCCA
BP GO:0009850 auxin metabolic process IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
MF GO:0010178 IAA-amino acid conjugate hydrolase activity IEP HCCA
MF GO:0010210 IAA-Phe conjugate hydrolase activity IEP HCCA
MF GO:0010211 IAA-Leu conjugate hydrolase activity IEP HCCA
BP GO:0010256 endomembrane system organization IEP HCCA
BP GO:0010260 obsolete animal organ senescence IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0010334 sesquiterpene synthase activity IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016143 S-glycoside metabolic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016815 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0018822 nitrile hydratase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0019757 glycosinolate metabolic process IEP HCCA
BP GO:0019759 glycosinolate catabolic process IEP HCCA
BP GO:0019760 glucosinolate metabolic process IEP HCCA
BP GO:0019762 glucosinolate catabolic process IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0034768 (E)-beta-ocimene synthase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042343 indole glucosinolate metabolic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0042435 indole-containing compound biosynthetic process IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0044277 cell wall disassembly IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046219 indolalkylamine biosynthetic process IEP HCCA
BP GO:0046482 para-aminobenzoic acid metabolic process IEP HCCA
BP GO:0046688 response to copper ion IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
MF GO:0050551 myrcene synthase activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050898 nitrile metabolic process IEP HCCA
MF GO:0052578 alpha-farnesene synthase activity IEP HCCA
MF GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor IEP HCCA
MF GO:0070401 NADP+ binding IEP HCCA
BP GO:0070542 response to fatty acid IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0080028 nitrile biosynthetic process IEP HCCA
MF GO:0080061 indole-3-acetonitrile nitrilase activity IEP HCCA
MF GO:0080109 indole-3-acetonitrile nitrile hydratase activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000612 PMP3 8 56
No external refs found!