AT4G27240

Description : zinc finger (C2H2 type) family protein

Gene families : OG0001550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001550_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G27240

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00197580	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
Adi_g104383	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g09060	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48763.t1	Aspi01Gene48763	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0032.g024887	No alias	not classified & original description: CDS=136-1440	0.03	OrthoFinder output from all 47 species
Ehy_g03517	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01004470001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
GSVIVT01008819001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	OrthoFinder output from all 47 species
GSVIVT01014576001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57650.1	LOC_Os01g57650	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os03g15790.1	LOC_Os03g15790	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
LOC_Os04g59380.1	LOC_Os04g59380	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os11g06840.1	LOC_Os11g06840	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
MA_13576g0010	No alias	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Ore_g04292	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g26989	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g27885	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g13508	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018625	No alias	not classified & original description: CDS=1-1434	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023140	No alias	not classified & original description: CDS=905-2272	0.02	OrthoFinder output from all 47 species
Smo268776	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
Solyc06g076820.1.1	Solyc06g076820	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Spa_g50745	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g50839	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e008786_P002	Zm00001e008786	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e019606_P002	Zm00001e019606	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT4G27240

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation