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  5. AT4G26750

AT4G26750


Description : hydroxyproline-rich glycoprotein family protein


Gene families : OG0003219 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G26750

Target Alias Description ECC score Gene Family Method Actions
Aop_g10694 No alias regulatory component *(VTA1) of VPS4-VTA1... 0.03 OrthoFinder output from all 47 species
Ceric.23G002200.1 Ceric.23G002200 regulatory component *(VTA1) of VPS4-VTA1... 0.03 OrthoFinder output from all 47 species
Dcu_g03750 No alias regulatory component *(VTA1) of VPS4-VTA1... 0.04 OrthoFinder output from all 47 species
GSVIVT01037729001 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.06 OrthoFinder output from all 47 species
Gb_39689 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.06 OrthoFinder output from all 47 species
LOC_Os06g20390.1 LOC_Os06g20390 regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.05 OrthoFinder output from all 47 species
MA_2527g0010 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
MA_955549g0010 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Mp1g06880.1 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Pir_g25093 No alias regulatory component *(VTA1) of VPS4-VTA1... 0.03 OrthoFinder output from all 47 species
Ppi_g33077 No alias regulatory component *(VTA1) of VPS4-VTA1... 0.02 OrthoFinder output from all 47 species
Solyc07g064980.3.1 Solyc07g064980 regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Zm00001e031021_P005 Zm00001e031021 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e036912_P001 Zm00001e036912 regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
InterPro domains Description Start Stop
IPR039431 Vta1/CALS_N 12 148
No external refs found!