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  5. AT4G26580

AT4G26580


Description : RING/U-box superfamily protein


Gene families : OG0001028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001028_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G26580
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Adi_g056482 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47964 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21889 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31240.t1 Aspi01Gene31240 E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65057.t1 Aspi01Gene65057 E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08695 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10536 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03379 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19869 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g13156 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01014737001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.25 OrthoFinder output from all 47 species
Gb_26029 No alias RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species
Len_g56731 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08441 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19199 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_105489g0010 No alias RING-H2-class E3 ligase 0.13 OrthoFinder output from all 47 species
Msp_g03890 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02260 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06404 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g015800.2.1 Solyc12g015800 RING-H2-class E3 ligase 0.25 OrthoFinder output from all 47 species
Tin_g13870 No alias E3 ubiquiTin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020043_P002 Zm00001e020043 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009808 lignin metabolic process IEP HCCA
BP GO:0009809 lignin biosynthetic process IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010089 xylem development IEP HCCA
BP GO:0010115 regulation of abscisic acid biosynthetic process IEP HCCA
BP GO:0010116 positive regulation of abscisic acid biosynthetic process IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010395 rhamnogalacturonan I metabolic process IEP HCCA
BP GO:0010400 rhamnogalacturonan I side chain metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010417 glucuronoxylan biosynthetic process IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019747 regulation of isoprenoid metabolic process IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030775 glucuronoxylan 4-O-methyltransferase activity IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043455 regulation of secondary metabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045828 positive regulation of isoprenoid metabolic process IEP HCCA
BP GO:0045834 positive regulation of lipid metabolic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046889 positive regulation of lipid biosynthetic process IEP HCCA
BP GO:0046890 regulation of lipid biosynthetic process IEP HCCA
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0052546 cell wall pectin metabolic process IEP HCCA
BP GO:0062013 positive regulation of small molecule metabolic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0080116 glucuronoxylan glucuronosyltransferase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902930 regulation of alcohol biosynthetic process IEP HCCA
BP GO:1902932 positive regulation of alcohol biosynthetic process IEP HCCA
BP GO:1903338 regulation of cell wall organization or biogenesis IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000652 regulation of secondary cell wall biogenesis IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 288 330
No external refs found!