AT4G26400

Description : RING/U-box superfamily protein

Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G26400

Target	Alias	Description	ECC score	Gene Family Method
AT1G26800	No alias	RING/U-box superfamily protein	0.03	OrthoFinder output from all 47 species
AT1G55530	No alias	RING/U-box superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G40830	RHC1A	RING-H2 finger C1A	0.01	OrthoFinder output from all 47 species
AT3G10815	No alias	RING/U-box superfamily protein	0.08	OrthoFinder output from all 47 species
AT3G13430	No alias	RING/U-box superfamily protein	0.01	OrthoFinder output from all 47 species
Adi_g012552	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g017038	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g082947	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g088306	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g04888	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g04416	RHC1A	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g05465	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g13383	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g44017	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene18424.t1	Aspi01Gene18424	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene27542.t1	Aspi01Gene27542	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene63212.t1	Aspi01Gene63212	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Azfi_s0149.g053204	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Cba_g05833	No alias	not classified & original description: none	0.17	OrthoFinder output from all 47 species
Ceric.07G095600.1	Ceric.07G095600	not classified & original description: pacid=50626992...	0.01	OrthoFinder output from all 47 species
Ceric.35G016600.1	Ceric.35G016600	not classified & original description: pacid=50582007...	0.01	OrthoFinder output from all 47 species
Dac_g03287	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g21770	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g07514	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g46359	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Dde_g08256	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05901	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g06759	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g11152	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ehy_g14500	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g27311	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015309001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Gb_12946	No alias	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
Gb_29787	No alias	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum...	0.01	OrthoFinder output from all 47 species
LOC_Os03g22830.2	RHC1A, LOC_Os03g22830	Probable E3 ubiquitin-protein ligase RHC1A...	0.04	OrthoFinder output from all 47 species
LOC_Os11g02670.1	LOC_Os11g02670	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum...	0.06	OrthoFinder output from all 47 species
MA_9328282g0010	No alias	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Msp_g10979	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Msp_g43938	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Nbi_g02310	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Nbi_g11583	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g16883	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g10063	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g62548	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146	No alias	not classified & original description: CDS=1-969	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286	No alias	not classified & original description: CDS=1-1674	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019777	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.01	OrthoFinder output from all 47 species
Sam_g06799	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Sam_g17099	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25212	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.05	OrthoFinder output from all 47 species
Spa_g05315	No alias	RING-H2-class BTL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Spa_g20368	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g05490	No alias	RING-H2-class BTL-subclass E3 ubiquiTin ligase &...	0.03	OrthoFinder output from all 47 species
Zm00001e011788_P002	Zm00001e011788	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Zm00001e025483_P004	Zm00001e025483	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp....	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	None	Extended
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0000303	response to superoxide	RCA	Interproscan
BP	GO:0000305	response to oxygen radical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009743	response to carbohydrate	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009873	ethylene-activated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	240	282
IPR039525	RNF126-like_zinc-ribbon	4	35

External Links

No external refs found!

AT4G26400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation