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  5. AT4G25890

AT4G25890


Description : 60S acidic ribosomal protein family


Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G25890

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00182570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
Adi_g053256 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g124944 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g10658 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ala_g35024 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Als_g12760 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g40935 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g41418 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0393.g067832 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g20552 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.24G014300.1 Ceric.24G014300 component *(RPP3) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Dac_g46270 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dac_g46271 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dcu_g19693 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Gb_31564 No alias component RPP3 of LSU proteome component 0.16 OrthoFinder output from all 47 species
LOC_Os01g13080.1 LOC_Os01g13080 component RPP3 of LSU proteome component 0.15 OrthoFinder output from all 47 species
LOC_Os06g48780.1 LOC_Os06g48780 component RPP3 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Len_g49119 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Len_g58897 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g04514 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.17 OrthoFinder output from all 47 species
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.23 OrthoFinder output from all 47 species
Msp_g00888 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g01622 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g06465 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g18566 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c21_16160V3.1 Pp3c21_16160 60S acidic ribosomal protein family 0.23 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006166 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g24981 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo105823 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Solyc07g009330.4.1 Solyc07g009330 component RPP3 of LSU proteome component 0.25 OrthoFinder output from all 47 species
Spa_g04803 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g17718 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g00251 No alias component *(RPP3) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e013180_P001 Zm00001e013180 component RPP3 of LSU proteome component 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006414 translational elongation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!