AT4G25560 (AtMYB18, MYB18)

Aliases : AtMYB18, MYB18

Description : myb domain protein 18

Gene families : OG0000015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25560
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00092800	ATMYB5, MYB5,...	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
AT1G57560	AtMYB50, MYB50	myb domain protein 50	0.07	OrthoFinder output from all 47 species
AT2G31180	ATMYB14, MYB14, MYB14AT	myb domain protein 14	0.03	OrthoFinder output from all 47 species
AT3G62610	ATMYB11, PFG2, MYB11	myb domain protein 11	0.04	OrthoFinder output from all 47 species
AT4G17785	MYB39	myb domain protein 39	0.04	OrthoFinder output from all 47 species
Aev_g02388	ATMIXTA, MYB16, ATMYB16	MYB class-R2R3 subgroup-8 transcription factor &...	0.03	OrthoFinder output from all 47 species
Aev_g13319	ATMIXTA, MYB16, ATMYB16	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g03953	ATMYB61, MYB61	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08939	ATMIXTA, MYB16, ATMYB16	MYB class-R2R3 subgroup-8 transcription factor &...	0.04	OrthoFinder output from all 47 species
Aop_g04870	MYB86, ATMYB86	MYB class-R2R3 subgroup-13 transcription factor &...	0.02	OrthoFinder output from all 47 species
Aop_g17526	AtMYB50, MYB50	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene06610.t1	AtMYB17, MYB17,...	MYB class-R2R3 subgroup-8 transcription factor &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene63727.t1	ATMIXTA, MYB16,...	MYB class-R2R3 subgroup-8 transcription factor &...	0.03	OrthoFinder output from all 47 species
Dcu_g19522	MYB55, AtMYB55	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26219	AtMYB50, MYB50	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01003662001	ATMYB102, ATM4, MYB102	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01008303001	BW62B, BW62C,...	RNA biosynthesis.transcriptional activation.MYB...	0.04	OrthoFinder output from all 47 species
GSVIVT01028328001	ATMYB14, MYB14, MYB14AT	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
LOC_Os02g41510.1	ATMYB15, ATY19,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g27090.1	MYB9, AtMYB9,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g55300.1	LOC_Os03g55300	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os07g48870.1	BOS1, AtMYB108,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
LOC_Os09g26170.1	MYB36, AtMYB36,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
MA_134436g0010	ATMYB5, MYB5	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
MA_1850812g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_278282g0010	MYB3, ATMYB3	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
MA_6285g0010	AtMYB17, MYB17	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
MA_66255g0010	ATMIXTA, MYB16, ATMYB16	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
MA_8464929g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_936250g0010	AtMYB107, MYB107	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
Nbi_g05300	ATMIXTA, MYB16, ATMYB16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g06162	ATMYB61, MYB61	MYB class-R2R3 subgroup-13 transcription factor &...	0.02	OrthoFinder output from all 47 species
Nbi_g07846	ATMIXTA, MYB16, ATMYB16	MYB class-R2R3 subgroup-8 transcription factor &...	0.03	OrthoFinder output from all 47 species
Ore_g25108	MYB103, AtMYB103	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g28265	ATMYB61, MYB61	MYB class-R2R3 subgroup-13 transcription factor &...	0.02	OrthoFinder output from all 47 species
Ppi_g16425	ATMYB61, MYB61	MYB class-R2R3 subgroup-13 transcription factor &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003255	ATMIXTA, MYB16, ATMYB16	MYB class-R2R3 subgroup-8 transcription factor &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018401	AtMYB107, MYB107	not classified & original description: CDS=146-2035	0.03	OrthoFinder output from all 47 species
Smo90153	MYB55, AtMYB55	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
Solyc02g079280.3.1	ATMYB102, ATM4,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Solyc03g005570.3.1	ATMYB14, MYB14,...	transcription factor (MYB)	0.05	OrthoFinder output from all 47 species
Solyc05g014290.4.1	AtMYB40, MYB40,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Solyc10g005240.3.1	ATY53, ATMYB67,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e005823_P001	MYB36, AtMYB36,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e007337_P001	DUO1, Zm00001e007337	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e010546_P001	MYB41, AtMYB41,...	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
Zm00001e016072_P001	MYB36, AtMYB36,...	transcription factor (MYB)	0.04	OrthoFinder output from all 47 species
Zm00001e028085_P001	MYB84, RAX3,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	IMP	Interproscan
BP	GO:0009751	response to salicylic acid	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	None	Extended
BP	GO:0010018	far-red light signaling pathway	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010218	response to far red light	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071490	cellular response to far red light	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
BP	GO:0031110	regulation of microtubule polymerization or depolymerization	IEP	HCCA
BP	GO:0032886	regulation of microtubule-based process	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048768	root hair cell tip growth	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0070507	regulation of microtubule cytoskeleton organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	69	110
IPR001005	SANT/Myb	12	59

External Links

No external refs found!

AT4G25560 (AtMYB18, MYB18)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation