AT4G25480 (DREB1A, ATCBF3, CBF3)

Aliases : DREB1A, ATCBF3, CBF3

Description : dehydration response element B1A

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25480
Cluster	HCCA: Cluster_139

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00194910	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AMTR_s00077p00141890	CRF3,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AMTR_s00115p00032780	ATERF4, RAP2.5,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AT1G63030	ddf2	Integrase-type DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g015562	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g100845	ATERF3, ERF3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g17847	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene56610.t1	DREB26, Aspi01Gene56610	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene56611.t1	DREB26, Aspi01Gene56611	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g03183	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g44548	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.10G005300.1	RAP2.12, Ceric.10G005300	transcription factor component *(HRE/RAP2.12) of...	0.05	OrthoFinder output from all 47 species
Ceric.10G005400.1	RAP2.12, Ceric.10G005400	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ceric.10G079000.1	ATERF-9, ERF9,...	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.27G015600.1	DEAR1, CEJ1,...	not classified & original description: pacid=50605746...	0.03	OrthoFinder output from all 47 species
Cre08.g364400	RAP2.2	No description available	0.01	OrthoFinder output from all 47 species
Dac_g06915	ATERF12, ERF12	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g09321	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Dac_g14308	No alias	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g15037	DEAR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g23015	ERF38, ATERF38	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g23248	RAP2.4	subgroup ERF-I transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g37743	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01019519001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
GSVIVT01035852001	SHN3	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
GSVIVT01035911001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
Gb_00125	TINY2	transcription factor (DREB)	0.05	OrthoFinder output from all 47 species
LOC_Os09g13940.2	LOC_Os09g13940	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os10g41330.1	ERF-6-6, ERF6,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Len_g57260	TINY2	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
MA_10431882g0010	No alias	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
MA_166248g0020	ERF-1, ATERF-1	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_67841g0010	tny	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Msp_g09426	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398	DEAR1, CEJ1, ATERF#011	not classified & original description: CDS=1-1134	0.02	OrthoFinder output from all 47 species
Smo38500	DREB2A, DREB2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
Solyc02g093130.3.1	DEAR3, Solyc02g093130	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Solyc08g078410.2.1	Solyc08g078410	transcription factor (DREB)	0.05	OrthoFinder output from all 47 species
Zm00001e007332_P001	Zm00001e007332	transcription factor (DREB)	0.05	OrthoFinder output from all 47 species
Zm00001e013685_P001	ATERF4, RAP2.5,...	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e014413_P001	Zm00001e014413	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
Zm00001e016421_P001	CRF4, Zm00001e016421	transcription factor (ERF)	0.07	OrthoFinder output from all 47 species
Zm00001e033541_P001	Zm00001e033541	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	RCA	Interproscan
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IDA	Interproscan
BP	GO:0009409	response to cold	IMP	Interproscan
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009409	response to cold	RCA	Interproscan
BP	GO:0009409	response to cold	TAS	Interproscan
BP	GO:0009414	response to water deprivation	IDA	Interproscan
BP	GO:0009414	response to water deprivation	IMP	Interproscan
BP	GO:0009414	response to water deprivation	RCA	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009631	cold acclimation	IMP	Interproscan
BP	GO:0009651	response to salt stress	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042538	hyperosmotic salinity response	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0010039	response to iron ion	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055072	iron ion homeostasis	IEP	HCCA
BP	GO:0055076	transition metal ion homeostasis	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	49	99

External Links

No external refs found!

AT4G25480 (DREB1A, ATCBF3, CBF3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation