AT4G25470 (FTQ4, CBF2, DREB1C, ATCBF2)

Aliases : FTQ4, CBF2, DREB1C, ATCBF2

Description : C-repeat/DRE binding factor 2

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25470
Cluster	HCCA: Cluster_139

Target	Alias	Description	ECC score	Gene Family Method
Adi_g016417	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g24731	No alias	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene56610.t1	DREB26, Aspi01Gene56610	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene56611.t1	DREB26, Aspi01Gene56611	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g04639	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g44548	No alias	not classified & original description: none	0.11	OrthoFinder output from all 47 species
Ehy_g08445	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g11454	ERF-1, ATERF-1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g11833	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.01	OrthoFinder output from all 47 species
Ehy_g28516	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009007001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	OrthoFinder output from all 47 species
GSVIVT01013914001	ERF-6-6, ERF6, ATERF6	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
LOC_Os01g54890.1	ERF-1, ATERF-1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os09g13940.2	LOC_Os09g13940	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
LOC_Os10g41330.1	ERF-6-6, ERF6,...	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Msp_g07037	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Msp_g09157	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Msp_g09426	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g18978	No alias	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g27129	No alias	subgroup ERF-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07910	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g29205	No alias	subgroup ERF-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g37562	HRE1	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ppi_g28083	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013122	ORA47	not classified & original description: CDS=1-783	0.01	OrthoFinder output from all 47 species
Zm00001e013685_P001	ATERF4, RAP2.5,...	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009409	response to cold	TAS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009631	cold acclimation	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	HCCA
BP	GO:0005982	starch metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	49	99

External Links

No external refs found!

AT4G25470 (FTQ4, CBF2, DREB1C, ATCBF2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation