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  5. AT4G24840

AT4G24840


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG0005258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G24840
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00234340 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane tethering.COG... 0.03 OrthoFinder output from all 47 species
Adi_g007762 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.06 OrthoFinder output from all 47 species
Adi_g057132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05072 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.05 OrthoFinder output from all 47 species
Ceric.19G014200.1 Ceric.19G014200 component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.120 No alias Vesicle trafficking.target membrane tethering.COG... 0.02 OrthoFinder output from all 47 species
Cre09.g402750 No alias Vesicle trafficking.target membrane tethering.COG... 0.02 OrthoFinder output from all 47 species
Dcu_g01680 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.05 OrthoFinder output from all 47 species
GSVIVT01008523001 No alias Vesicle trafficking.target membrane tethering.COG... 0.12 OrthoFinder output from all 47 species
Gb_39305 No alias component COG2 of COG (Conserved-Oligomeric Golgi) complex 0.08 OrthoFinder output from all 47 species
LOC_Os03g63250.1 LOC_Os03g63250 component COG2 of COG (Conserved-Oligomeric Golgi) complex 0.13 OrthoFinder output from all 47 species
Len_g02886 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.03 OrthoFinder output from all 47 species
Lfl_g02229 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.09 OrthoFinder output from all 47 species
Mp7g10260.1 No alias component COG2 of COG (Conserved-Oligomeric Golgi) complex 0.09 OrthoFinder output from all 47 species
Nbi_g12859 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.02 OrthoFinder output from all 47 species
Ore_g05182 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.03 OrthoFinder output from all 47 species
Ore_g22761 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.04 OrthoFinder output from all 47 species
Pnu_g26467 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.02 OrthoFinder output from all 47 species
Smo86129 No alias Vesicle trafficking.target membrane tethering.COG... 0.08 OrthoFinder output from all 47 species
Solyc08g006660.2.1 Solyc08g006660 component COG2 of COG (Conserved-Oligomeric Golgi) complex 0.21 OrthoFinder output from all 47 species
Tin_g14920 No alias component *(COG2) of COG (Conserved-Oligomeric Golgi)... 0.02 OrthoFinder output from all 47 species
Zm00001e006363_P003 Zm00001e006363 component COG2 of COG (Conserved-Oligomeric Golgi) complex 0.02 OrthoFinder output from all 47 species
Zm00001e011654_P001 Zm00001e011654 component COG2 of COG (Conserved-Oligomeric Golgi) complex 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000266 mitochondrial fission IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005797 Golgi medial cisterna IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
CC GO:0005938 cell cortex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006828 manganese ion transport IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006882 cellular zinc ion homeostasis IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010235 guard mother cell cytokinesis IEP HCCA
MF GO:0010427 abscisic acid binding IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015410 ABC-type manganese transporter activity IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0019840 isoprenoid binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
CC GO:0031985 Golgi cisterna IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0043178 alcohol binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
MF GO:0048040 UDP-glucuronate decarboxylase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055069 zinc ion homeostasis IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024602 COG_su2_N 31 163
IPR024603 COG_complex_COG2_C 591 718
No external refs found!