AT4G24210 (SLY1)

Aliases : SLY1

Description : F-box family protein

Gene families : OG0001049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24210

Target	Alias	Description	ECC score	Gene Family Method
Als_g26981	SLY1	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.02	OrthoFinder output from all 47 species
Aob_g03177	SLY1	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.02	OrthoFinder output from all 47 species
Cba_g22907	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.02	OrthoFinder output from all 47 species
Ceric.25G014200.1	Ceric.25G014200	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.02	OrthoFinder output from all 47 species
Gb_08963	SLY1	SLY-type gibberellin signal transducer. component F-box...	0.04	OrthoFinder output from all 47 species
MA_146085g0010	SLY1	SLY-type gibberellin signal transducer. component F-box...	0.02	OrthoFinder output from all 47 species
MA_152693g0010	SLY1	SLY-type gibberellin signal transducer. component F-box...	0.02	OrthoFinder output from all 47 species
MA_196364g0010	SLY1	SLY-type gibberellin signal transducer. component F-box...	0.03	OrthoFinder output from all 47 species
Msp_g08673	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.01	OrthoFinder output from all 47 species
Ore_g18489	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.03	OrthoFinder output from all 47 species
Solyc07g047680.3.1	SLY2, Solyc07g047680	SLY-type gibberellin signal transducer. component F-box...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
BP	GO:0009312	oligosaccharide biosynthetic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009845	seed germination	IMP	Interproscan
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	None	Extended
BP	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010162	seed dormancy process	IMP	Interproscan
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010325	raffinose family oligosaccharide biosynthetic process	RCA	Interproscan
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	IPI	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042538	hyperosmotic salinity response	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048444	floral organ morphogenesis	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090697	post-embryonic plant organ morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010452	histone H3-K36 methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051568	histone H3-K4 methylation	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	32	76

External Links

No external refs found!

AT4G24210 (SLY1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation