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AT4G23930


Description : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family


Gene families : OG0000463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G23930

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00269390 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00077p00180970 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Ala_g18928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G033100.1 Ceric.27G033100 not classified & original description: pacid=50604866... 0.05 OrthoFinder output from all 47 species
Dcu_g06139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g03850.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g47947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021071 No alias not classified & original description: CDS=1-585 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005773 vacuole IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004864 LEA_2 66 171
No external refs found!