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  5. Gb_39686

Gb_39686


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0009308 (LandPlants) Phylogenetic Tree(s): OG_02_0009308_tree ,
OG_03_0012392 (SeedPlants) Phylogenetic Tree(s): OG_03_0012392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39686
Cluster HCCA: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00082980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19220 ARF19, IAA22, ARF11 auxin response factor 19 0.02 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.04 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.04 Archaeplastida
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.02 Archaeplastida
GSVIVT01004942001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01020805001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01021128001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01021553001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01023149001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01025198001 No alias RNA biosynthesis.transcriptional activation.B3... 0.01 Archaeplastida
GSVIVT01025691001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os10g33940.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_103763g0010 No alias Auxin response factor 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10432528g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_122218g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_137387g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_40335g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c26_11550V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.02 Archaeplastida
Solyc02g037530.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc03g118290.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e012670_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e014833_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e020205_P004 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e030325_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e032135_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e032423_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.04 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 LandPlants
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.04 LandPlants
MA_103763g0010 No alias Auxin response factor 6 OS=Arabidopsis thaliana... 0.02 LandPlants
MA_85955g0010 No alias transcription factor (ARF) 0.03 LandPlants
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.04 LandPlants
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 SeedPlants
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 SeedPlants
MA_85955g0010 No alias transcription factor (ARF) 0.02 SeedPlants
Solyc07g043610.3.1 No alias transcription factor (ARF) 0.01 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 414 501
No external refs found!