AT4G21670 (ATCPL1, CPL1, FRY2)

Aliases : ATCPL1, CPL1, FRY2

Description : C-terminal domain phosphatase-like 1

Gene families : OG0002263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002263_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G21670

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00267690	ATCPL1, CPL1,...	Protein modification.dephosphorylation.aspartate-based...	0.1	OrthoFinder output from all 47 species
Adi_g020486	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g058427	ATCPL1, CPL1, FRY2	group-I RNA polymerase-II phosphatase & original...	0.05	OrthoFinder output from all 47 species
Aev_g06171	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g07037	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.06	OrthoFinder output from all 47 species
Als_g14449	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g12939	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27053.t1	ATCPL1, CPL1,...	group-I RNA polymerase-II phosphatase & original...	0.02	OrthoFinder output from all 47 species
Cba_g12689	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34635	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G049400.1	ATCPL1, CPL1,...	subcluster CPL phosphatase & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g07780	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04460	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01006448001	ATCPL1, CPL1, FRY2	Protein modification.dephosphorylation.aspartate-based...	0.04	OrthoFinder output from all 47 species
LOC_Os01g63820.1	CPL2, ATCPL2,...	RNA polymerase-II phosphatase. CPL phosphatase	0.05	OrthoFinder output from all 47 species
LOC_Os04g44710.1	ATCPL1, CPL1,...	RNA polymerase-II phosphatase. CPL phosphatase	0.03	OrthoFinder output from all 47 species
Lfl_g03473	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g03481	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g07706	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g01492	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12247	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g32634	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11629	No alias	subcluster CPL phosphatase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29272	No alias	subcluster CPL phosphatase & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g38752	No alias	subcluster CPL phosphatase & original description: none	0.02	OrthoFinder output from all 47 species
Smo173599	ATCPL1, CPL1, FRY2	Protein modification.dephosphorylation.aspartate-based...	0.04	OrthoFinder output from all 47 species
Solyc02g078550.3.1	ATCPL1, CPL1,...	RNA polymerase-II phosphatase. CPL phosphatase	0.06	OrthoFinder output from all 47 species
Spa_g54226	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g06700	ATCPL1, CPL1, FRY2	subcluster CPL phosphatase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e015225_P001	ATCPL1, CPL1,...	RNA polymerase-II phosphatase. CPL phosphatase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004721	phosphoprotein phosphatase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009611	response to wounding	IMP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IMP	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016791	phosphatase activity	IDA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0001763	morphogenesis of a branching structure	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004532	exoribonuclease activity	IEP	HCCA
MF	GO:0004534	5'-3' exoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007140	male meiotic nuclear division	IEP	HCCA
BP	GO:0007143	female meiotic nuclear division	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008409	5'-3' exonuclease activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
BP	GO:0010452	histone H3-K36 methylation	IEP	HCCA
BP	GO:0010586	miRNA metabolic process	IEP	HCCA
BP	GO:0010587	miRNA catabolic process	IEP	HCCA
BP	GO:0016108	tetraterpenoid metabolic process	IEP	HCCA
BP	GO:0016116	carotenoid metabolic process	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031058	positive regulation of histone modification	IEP	HCCA
BP	GO:0031060	regulation of histone methylation	IEP	HCCA
BP	GO:0031062	positive regulation of histone methylation	IEP	HCCA
BP	GO:0031401	positive regulation of protein modification process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034661	ncRNA catabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
MF	GO:0042800	histone H3K4 methyltransferase activity	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
BP	GO:0140013	meiotic nuclear division	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140938	histone H3 methyltransferase activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004274	FCP1_dom	267	376
IPR014720	dsRBD_dom	754	790
IPR014720	dsRBD_dom	857	921

External Links

No external refs found!

AT4G21670 (ATCPL1, CPL1, FRY2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation