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AT4G19190


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG0006419 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006419_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G19190

Target Alias Description ECC score Gene Family Method Actions
Ceric.12G048600.1 Ceric.12G048600 not classified & original description: pacid=50600804... 0.03 OrthoFinder output from all 47 species
Dcu_g06138 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g20100.1 No alias Uncharacterized zinc finger CCHC domain-containing... 0.03 OrthoFinder output from all 47 species
Pnu_g04457 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g075420.4.1 Solyc08g075420 Uncharacterized zinc finger CCHC domain-containing... 0.06 OrthoFinder output from all 47 species
Zm00001e013226_P001 Zm00001e013226 Uncharacterized zinc finger CCHC domain-containing... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000164 protein phosphatase type 1 complex IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070878 primary miRNA binding IEP HCCA
MF GO:0070883 pre-miRNA binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR019339 CIR_N_dom 48 83
No external refs found!