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  5. AT4G18980

AT4G18980 (AtS40-3)


Aliases : AtS40-3

Description : AtS40-3


Gene families : OG0000217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18980
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT5G03230 No alias Protein of unknown function, DUF584 0.02 OrthoFinder output from all 47 species
Adi_g003804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g059495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11220 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g11833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g24167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05704.t1 Aspi01Gene05704 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45725.t1 Aspi01Gene45725 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010657 No alias not classified & original description: CDS=1-753 0.03 OrthoFinder output from all 47 species
Azfi_s0705.g082674 No alias not classified & original description: CDS=1-897 0.04 OrthoFinder output from all 47 species
Cba_g10029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G107400.1 Ceric.02G107400 not classified & original description: pacid=50584750... 0.01 OrthoFinder output from all 47 species
Ceric.32G006200.1 Ceric.32G006200 not classified & original description: pacid=50597859... 0.02 OrthoFinder output from all 47 species
Dac_g16989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00595 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01004631001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01037661001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_36660 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g52730.1 LOC_Os01g52730 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g52740.1 LOC_Os01g52740 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g33760.1 LOC_Os04g33760 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os07g33270.1 LOC_Os07g33270 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g27350.1 LOC_Os10g27350 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g07650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21183 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434437g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_118009g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_2588g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_54260g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_63850g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_88194g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g42481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g26878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37001 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g02384 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g08258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g006275.1.1 Solyc10g006275 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g069450.1.1 Solyc11g069450 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e019921_P001 Zm00001e019921 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e035102_P001 Zm00001e035102 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010150 leaf senescence IMP Interproscan
BP GO:0010468 regulation of gene expression IEP Interproscan
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Type GO Term Name Evidence Source
MF GO:0000064 L-ornithine transmembrane transporter activity IEP HCCA
BP GO:0000162 tryptophan biosynthetic process IEP HCCA
MF GO:0000257 nitrilase activity IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003995 acyl-CoA dehydrogenase activity IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004834 tryptophan synthase activity IEP HCCA
MF GO:0005290 L-histidine transmembrane transporter activity IEP HCCA
MF GO:0005476 carnitine:acyl carnitine antiporter activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006560 proline metabolic process IEP HCCA
BP GO:0006561 proline biosynthetic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
BP GO:0009625 response to insect IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009753 response to jasmonic acid IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009830 cell wall modification involved in abscission IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
BP GO:0010118 stomatal movement IEP HCCA
BP GO:0010256 endomembrane system organization IEP HCCA
BP GO:0010260 obsolete animal organ senescence IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0010334 sesquiterpene synthase activity IEP HCCA
MF GO:0015101 organic cation transmembrane transporter activity IEP HCCA
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015174 basic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015179 L-amino acid transmembrane transporter activity IEP HCCA
MF GO:0015189 L-lysine transmembrane transporter activity IEP HCCA
MF GO:0015226 carnitine transmembrane transporter activity IEP HCCA
MF GO:0015227 acyl carnitine transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015651 quaternary ammonium group transmembrane transporter activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016143 S-glycoside metabolic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016815 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0018822 nitrile hydratase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0019757 glycosinolate metabolic process IEP HCCA
BP GO:0019759 glycosinolate catabolic process IEP HCCA
BP GO:0019760 glucosinolate metabolic process IEP HCCA
BP GO:0019762 glucosinolate catabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0034768 (E)-beta-ocimene synthase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042343 indole glucosinolate metabolic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0042435 indole-containing compound biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0044277 cell wall disassembly IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0046219 indolalkylamine biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046688 response to copper ion IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
MF GO:0050551 myrcene synthase activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0050898 nitrile metabolic process IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
MF GO:0052578 alpha-farnesene synthase activity IEP HCCA
MF GO:0052890 oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor IEP HCCA
MF GO:0070401 NADP+ binding IEP HCCA
BP GO:0070542 response to fatty acid IEP HCCA
MF GO:0072349 modified amino acid transmembrane transporter activity IEP HCCA
BP GO:0080028 nitrile biosynthetic process IEP HCCA
MF GO:0080061 indole-3-acetonitrile nitrilase activity IEP HCCA
MF GO:0080109 indole-3-acetonitrile nitrile hydratase activity IEP HCCA
MF GO:1901474 azole transmembrane transporter activity IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
InterPro domains Description Start Stop
IPR007608 Senescence_reg_S40 23 105
No external refs found!