AT4G18730 (RPL16B)

Aliases : RPL16B

Description : ribosomal protein L16B

Gene families : OG0001936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001936_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18730

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00200160	RPL16A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
AMTR_s00025p00203150	RPL16A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	OrthoFinder output from all 47 species
Adi_g004325	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Adi_g080914	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Adi_g080915	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ala_g17681	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Ala_g30852	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Als_g11502	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g18409	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aob_g19246	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g17101	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Aop_g21493	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g30844	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Aop_g70327	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aspi01Gene56794.t1	RPL16A, Aspi01Gene56794	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0350.g066549	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Cba_g11185	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.02G112300.1	RPL16A, Ceric.02G112300	component *(uL5) of large ribosomal-subunit (LSU)...	0.28	OrthoFinder output from all 47 species
Ceric.39G033200.1	RPL16A, Ceric.39G033200	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020610.38	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.3	OrthoFinder output from all 47 species
Cre01.g027000	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.51	OrthoFinder output from all 47 species
Dac_g00272	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Dac_g15705	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g32571	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Dac_g38919	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g08602	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Dcu_g27285	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g27669	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Dde_g25923	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01020743001	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.38	OrthoFinder output from all 47 species
GSVIVT01021244001	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.38	OrthoFinder output from all 47 species
Gb_08546	RPL16A	component RPL11 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Gb_22357	RPL16A	component RPL11 of LSU proteome component	0.25	OrthoFinder output from all 47 species
LOC_Os01g10820.1	RPL16A, LOC_Os01g10820	component RPL11 of LSU proteome component	0.3	OrthoFinder output from all 47 species
LOC_Os02g14059.1	RPL16A, LOC_Os02g14059	component RPL11 of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os05g11710.1	RPL16A, LOC_Os05g11710	component RPL11 of LSU proteome component	0.45	OrthoFinder output from all 47 species
LOC_Os06g35730.1	RPL16A, LOC_Os06g35730	component RPL11 of LSU proteome component	0.48	OrthoFinder output from all 47 species
Len_g03545	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g17266	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g22000	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g31914	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_57785g0010	RPL16A	60S ribosomal protein L11-1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_74060g0010	RPL16A	component RPL11 of LSU proteome component	0.11	OrthoFinder output from all 47 species
MA_86694g0010	RPL16A	component RPL11 of LSU proteome component	0.37	OrthoFinder output from all 47 species
Mp2g24740.1	RPL16A	component RPL11 of LSU proteome component	0.49	OrthoFinder output from all 47 species
Mp6g18870.1	RPL16A	component RPL11 of LSU proteome component	0.36	OrthoFinder output from all 47 species
Msp_g09123	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Msp_g34305	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g00824	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pp3c2_33280V3.1	RPL16A, Pp3c2_33280	ribosomal protein L16B	0.05	OrthoFinder output from all 47 species
Pp3c5_3870V3.1	RPL16A, Pp3c5_3870	Ribosomal L5P family protein	0.15	OrthoFinder output from all 47 species
Pp3c7_20160V3.1	RPL16A, Pp3c7_20160	ribosomal protein large subunit 16A	0.26	OrthoFinder output from all 47 species
Ppi_g06046	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g63573	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016923	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g17383	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.33	OrthoFinder output from all 47 species
Sam_g21398	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Smo444767	RPL16A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	OrthoFinder output from all 47 species
Solyc02g086240.3.1	RPL16A, Solyc02g086240	component RPL11 of LSU proteome component	0.47	OrthoFinder output from all 47 species
Solyc07g055230.4.1	RPL16A, Solyc07g055230	component RPL11 of LSU proteome component	0.32	OrthoFinder output from all 47 species
Solyc10g007980.3.1	RPL16A, Solyc10g007980	component RPL11 of LSU proteome component	0.43	OrthoFinder output from all 47 species
Solyc12g010930.2.1	RPL16A, Solyc12g010930	component RPL11 of LSU proteome component	0.49	OrthoFinder output from all 47 species
Spa_g07232	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Spa_g07233	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.33	OrthoFinder output from all 47 species
Spa_g22809	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.29	OrthoFinder output from all 47 species
Spa_g25528	No alias	component *(uL5) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Spa_g30816	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g36588	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g54041	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g02344	RPL16A	component *(uL5) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Zm00001e024913_P001	RPL16A, Zm00001e024913	component RPL11 of LSU proteome component	0.43	OrthoFinder output from all 47 species
Zm00001e026886_P003	RPL16A, Zm00001e026886	component RPL11 of LSU proteome component	0.35	OrthoFinder output from all 47 species
Zm00001e037255_P001	RPL16A, Zm00001e037255	component RPL11 of LSU proteome component	0.39	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010015	root morphogenesis	None	Extended
BP	GO:0010101	post-embryonic root morphogenesis	None	Extended
BP	GO:0010102	lateral root morphogenesis	IEP	Interproscan
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022625	cytosolic large ribosomal subunit	ISS	Interproscan
CC	GO:0022625	cytosolic large ribosomal subunit	TAS	Interproscan
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090697	post-embryonic plant organ morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031309	Ribosomal_L5_C	66	164
IPR031310	Ribosomal_L5_N	9	62

External Links

No external refs found!

AT4G18730 (RPL16B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation